Motif IL_56539.1 Version IL_56539.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | 3-5 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CZR_361 | 6CZR | 0.3590 | 0 | 1a | SSU rRNA | G | 623 | A | 624 | U | 625 | A | 626 | C | 627 | * | G | 581 | U | 582 | C | 583 | cWW | ncWW | ncSH | cWW | |||
| 2 | IL_6CK5_002 | 6CK5 | 0.1284 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 42 | A | 43 | C | 44 | cWW | cWW | cSH | cSH | tHS | cWW |
| 3 | IL_6DME_002 | 6DME | 0.0000 | 0 | 8-nt loop receptor | A | ppGpp Riboswitch | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | * | G | 37 | A | 38 | C | 39 | cWW | cWW | ncSH | ncSH | tHS | cWW |
| 4 | IL_4PDB_001 | 4PDB | 0.5557 | 0 | Other IL | I | SELEX RNA aptamer | C | 9 | A | 10 | G | 11 | U | 12 | G | 13 | * | C | 28 | A | 29 | G | 30 | cWW | cwW | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAC*GUC | 1 |
| GGUUC*GAC | 1 |
| GGAUC*GAC | 1 |
| CAGUG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA*U | 1 |
| GUU*A | 1 |
| GAU*A | 1 |
| AGU*A | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 8-nt loop receptor (2)
- Other IL (1)
- (1)
- Basepair signature
- cWW-cWW-cSH-cWW-L
- Heat map statistics
- Min 0.13 | Avg 0.32 | Max 0.60
Coloring options: