Motif IL_57018.1 Version IL_57018.1 of this group appears in releases 3.12 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_095 | 4V9F | 0.7306 | 3 | Bulged stacked bases | 0 | LSU rRNA | U | 2732 | U | 2733 | * | A | 2746 | G | 2750 | cWW | cWW |
| 2 | IL_5CNR_002 | 5CNR | 0.0000 | 1 | Single bulged A | A+B | RNA (16-mer) + RNA (11-mer) | C | 12 | C | 13 | * | G | 38 | G | 40 | cWW | cWW |
| 3 | IL_4V9F_041 | 4V9F | 0.4380 | 1 | Single bulged G | 0 | LSU rRNA | C | 1225 | G | 1226 | * | U | 1136 | G | 1138 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UU*ACGUG | 1 |
| CC*GAG | 1 |
| CG*UGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *CGU | 1 |
| *A | 1 |
| *G | 1 |
- Annotations
-
- Single bulged G (1)
- Bulged stacked bases (1)
- Single bulged A (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.44 | Avg 0.43 | Max 0.78
Coloring options: