Motif IL_57680.1 Version IL_57680.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J9W_055 | 3J9W | 0.3975 | 1 | AA | SSU rRNA | C | 1416 | A | 1417 | C | 1418 | * | G | 1501 | A | 1502 | G | 1504 | cWW | cWW | |
| 2 | IL_4M6D_013 | 4M6D | 0.1538 | 0 | H | aptamer | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | |
| 3 | IL_4M4O_004 | 4M4O | 0.0000 | 0 | B | RNA (59-MER) | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | |
| 4 | IL_5A2Q_065 | 5A2Q | 0.6764 | 0 | 2 | SSU rRNA | U | 1306 | U | 1307 | U | 1308 | * | A | 1291 | C | 1292 | A | 1293 | cWW | ntSH | cWW |
| 5 | IL_4BTS_322 | 4BTS | 0.6390 | 0 | DA | SSU rRNA | U | 1221 | U | 1222 | U | 1223 | * | A | 1206 | C | 1207 | A | 1208 | cWW | ntSH | cWW |
| 6 | IL_4R0D_002 | 4R0D | 0.7648 | 4 | A | Group II catalytic intron | G | 74 | A | 75 | C | 76 | * | G | 103 | U | 108 | C | 109 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAG*CAC | 2 |
| UUU*ACA | 2 |
| CAC*GAAG | 1 |
| GAC*GAAGCUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 2 |
| U*C | 2 |
| A*AA | 1 |
| A*AAGCU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.50 | Max 0.84
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