Motif IL_58535.2 Version IL_58535.2 of this group appears in releases 3.3 to 3.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_265 | 4V8P | 0.3566 | 0 | Isolated non-canonical cWW pair (H) | D1 | LSU rRNA | G | 2812 | C | 2813 | U | 2814 | * | G | 2851 | A | 2852 | U | 2853 | cWW | cWWa | cWW |
| 2 | IL_4R4V_006 | 4R4V | 0.0000 | 2 | Isolated non-canonical cWW pair | A | VS ribozyme RNA | G | 749 | G | 752 | C | 753 | * | G | 724 | A | 725 | C | 726 | cWW | cWW | cWW |
| 3 | IL_4R4V_012 | 4R4V | 0.0000 | 2 | A | VS ribozyme RNA | G | 749||||7_556 | G | 752||||7_556 | C | 753||||7_556 | * | G | 724||||7_556 | A | 725||||7_556 | C | 726||||7_556 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAGC*GAC | 2 |
| GCU*GAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAG*A | 2 |
| C*A | 1 |
- Annotations
-
- Isolated non-canonical cWW pair (1)
- (1)
- Isolated non-canonical cWW pair (H) (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.36 | Avg 0.16 | Max 0.36
Coloring options: