RNA 3D Hub //

Motif IL_58579.2 Version IL_58579.2 of this group appears in releases 3.91 to 3.94

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-21-72-73-64-5
1 IL_3MXH_0013MXH0.75911Minor groove platform with extra cWWRc-di-GMP riboswitchG94A95G97G98*C11A12C13cWWcWWcWW
2 IL_4WF9_0034WF90.52120Minor groove platform with extra cWWX LSU rRNAU480C481U482C483*G42A43A44cSHcWWcWW
3 IL_8C3A_4328C3A0.48771CM SSU rRNAU778A780G781C782*G736A737A738ncSHncWWcWWcWW
4 IL_5J7L_0065J7L0.43900Minor groove platform with extra cWWAA SSU rRNAC99G100A101G102*C67G68G69cWWtHScWWcWW
5 IL_8P9A_4008P9A0.00000sR SSU rRNAU533A534A535C536*G516U517A518cWWtHScWW
6 IL_9DFE_0309DFE0.339801A LSU rRNAA899A900A901C902*G875C876U877cWWtHScWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUGG*CAC1
UCUC*GAA1
UUAGC*GAA1
CGAG*CGG1
UAAC*GUA1
AAAC*GCU1
Non-Watson-Crick part of the motif
SequenceCounts
AUG*A1
CU*A1
UAG*A1
GA*G1
AA*U1
AA*C1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform with extra cWW (3)
  • (3)
    • Basepair signature
    cWW-L-cWW-cWW
    Heat map statistics
    Min 0.34 | Avg 0.48 | Max 0.88
    Help

    Coloring options:

    IL_3MXH_001:IL_3MXH_001 = 0IL_3MXH_001:IL_4WF9_003 = 0.5623IL_3MXH_001:IL_8C3A_432 = 0.7975IL_3MXH_001:IL_5J7L_006 = 0.7685IL_3MXH_001:IL_8P9A_400 = 0.7591IL_3MXH_001:IL_9DFE_030 = 0.8761IL_4WF9_003:IL_3MXH_001 = 0.5623IL_4WF9_003:IL_4WF9_003 = 0IL_4WF9_003:IL_8C3A_432 = 0.5228IL_4WF9_003:IL_5J7L_006 = 0.5408IL_4WF9_003:IL_8P9A_400 = 0.5212IL_4WF9_003:IL_9DFE_030 = 0.6079IL_8C3A_432:IL_3MXH_001 = 0.7975IL_8C3A_432:IL_4WF9_003 = 0.5228IL_8C3A_432:IL_8C3A_432 = 0IL_8C3A_432:IL_5J7L_006 = 0.3718IL_8C3A_432:IL_8P9A_400 = 0.4877IL_8C3A_432:IL_9DFE_030 = 0.4878IL_5J7L_006:IL_3MXH_001 = 0.7685IL_5J7L_006:IL_4WF9_003 = 0.5408IL_5J7L_006:IL_8C3A_432 = 0.3718IL_5J7L_006:IL_5J7L_006 = 0IL_5J7L_006:IL_8P9A_400 = 0.439IL_5J7L_006:IL_9DFE_030 = 0.4824IL_8P9A_400:IL_3MXH_001 = 0.7591IL_8P9A_400:IL_4WF9_003 = 0.5212IL_8P9A_400:IL_8C3A_432 = 0.4877IL_8P9A_400:IL_5J7L_006 = 0.439IL_8P9A_400:IL_8P9A_400 = 0IL_8P9A_400:IL_9DFE_030 = 0.3398IL_9DFE_030:IL_3MXH_001 = 0.8761IL_9DFE_030:IL_4WF9_003 = 0.6079IL_9DFE_030:IL_8C3A_432 = 0.4878IL_9DFE_030:IL_5J7L_006 = 0.4824IL_9DFE_030:IL_8P9A_400 = 0.3398IL_9DFE_030:IL_9DFE_030 = 0IL_3MXH_001IL_4WF9_003IL_8C3A_432IL_5J7L_006IL_8P9A_400IL_9DFE_030Discrepancy0.000.200.400.600.80
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