Motif IL_58579.2 Version IL_58579.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-2 | 1-7 | 2-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3MXH_001 | 3MXH | 0.7591 | 1 | Minor groove platform with extra cWW | R | Cyclic di-GMP-I riboswitch | G | 94 | A | 95 | G | 97 | G | 98 | * | C | 11 | A | 12 | C | 13 | cWW | cWW | cWW | ||
| 2 | IL_4WF9_003 | 4WF9 | 0.5212 | 0 | Minor groove platform with extra cWW | X | LSU rRNA | U | 480 | C | 481 | U | 482 | C | 483 | * | G | 42 | A | 43 | A | 44 | cSH | cWW | cWW | ||
| 3 | IL_8C3A_432 | 8C3A | 0.4877 | 1 | CM | SSU rRNA | U | 778 | A | 780 | G | 781 | C | 782 | * | G | 736 | A | 737 | A | 738 | ncSH | ncWW | cWW | cWW | ||
| 4 | IL_5J7L_006 | 5J7L | 0.4390 | 0 | Minor groove platform with extra cWW | AA | SSU rRNA | C | 99 | G | 100 | A | 101 | G | 102 | * | C | 67 | G | 68 | G | 69 | cWW | tHS | cWW | cWW | |
| 5 | IL_8P9A_400 | 8P9A | 0.0000 | 0 | sR | SSU rRNA | U | 533 | A | 534 | A | 535 | C | 536 | * | G | 516 | U | 517 | A | 518 | cWW | tHS | cWW | |||
| 6 | IL_9DFE_030 | 9DFE | 0.3398 | 0 | 1A | LSU rRNA | A | 899 | A | 900 | A | 901 | C | 902 | * | G | 875 | C | 876 | U | 877 | cWW | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUGG*CAC | 1 |
| UCUC*GAA | 1 |
| UUAGC*GAA | 1 |
| CGAG*CGG | 1 |
| UAAC*GUA | 1 |
| AAAC*GCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUG*A | 1 |
| CU*A | 1 |
| UAG*A | 1 |
| GA*G | 1 |
| AA*U | 1 |
| AA*C | 1 |
- Annotations
-
- Minor groove platform with extra cWW (3)
- (3)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.34 | Avg 0.48 | Max 0.88
Coloring options: