Motif IL_58835.1 Version IL_58835.1 of this group appears in releases 3.95 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5V1K_003 | 5V1K | 0.4005 | 0 | B+A | RNA (12-mer) | C | 203 | G | 204 | A | 205 | A | 206 | * | 5BU | 107||A | 8RJ | 108||A | A | 109 | G | 110 | cWW | tSH | tWW | cWW | |
| 2 | IL_5UNE_005 | 5UNE | 0.0000 | 0 | tSH-tHW | A+B | RNA (47-MER) | G | 21 | C | 22 | A | 23 | C | 24 | * | G | 21 | C | 22 | A | 23 | C | 24 | cWW | ncSW | ntHW | cWW |
| 3 | IL_7LO9_006 | 7LO9 | 0.2411 | 0 | D+C | Chains: A,B,C,D | C | 3 | G | 4 | ZAD | 5 | A | 6 | * | 5BU | 7 | U | 8 | A | 9 | G | 10 | cWW | tSH | tWW | cWW | |
| 4 | IL_7LO9_005 | 7LO9 | 0.2869 | 0 | C+D | Chains: A,B,C,D | C | 3 | G | 4 | ZAD | 5 | A | 6 | * | 5BU | 7 | U | 8 | A | 9 | G | 10 | cWW | tSH | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG(ZAD)A*(5BU)UAG | 2 |
| CGAA*(5BU)(8RJ)AG | 1 |
| GCAC*GCAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G(ZAD)*UA | 2 |
| GA*(8RJ)A | 1 |
| CA*CA | 1 |
Release history
| Release | 3.95 |
|---|---|
| Date | 2025-03-26 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- tSH-tHW (1)
- Basepair signature
- cWW-tSH-tWW-cWW
- Heat map statistics
- Min 0.16 | Avg 0.29 | Max 0.61
Coloring options: