Motif IL_58835.1 Version IL_58835.1 of this group appears in releases 3.95 to 3.95

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8	1-8	2-7	3-6	4-5
1	IL_5V1K_003	5V1K	0.4005		B+A	RNA (12-mer)	C	203	G	204	A	205	A	206	*	5BU	107\|\|A	8RJ	108\|\|A	A	109	G	110	cWW	tSH	tWW	cWW
2	IL_5UNE_005	5UNE	0.0000	tSH-tHW	A+B	RNA (47-MER)	G	21	C	22	A	23	C	24	*	G	21	C	22	A	23	C	24	cWW	ncSW	ntHW	cWW
3	IL_7LO9_006	7LO9	0.2411		D+C	Chains: A,B,C,D	C	3	G	4	ZAD	5	A	6	*	5BU	7	U	8	A	9	G	10	cWW	tSH	tWW	cWW
4	IL_7LO9_005	7LO9	0.2869		C+D	Chains: A,B,C,D	C	3	G	4	ZAD	5	A	6	*	5BU	7	U	8	A	9	G	10	cWW	tSH	tWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CG(ZAD)A*(5BU)UAG	2
CGAA*(5BU)(8RJ)AG	1
GCAC*GCAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
G(ZAD)*UA	2
GA*(8RJ)A	1
CA*CA	1

Release history

Release	3.95
Date	2025-03-26
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
tSH-tHW (1)
Basepair signature: cWW-tSH-tWW-cWW
Heat map statistics: Min 0.16 | Avg 0.29 | Max 0.61

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view

reading 514 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

2 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: A

model 1.2 alternative locations: B

Default Van der Waals type for model set to Jmol

514 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 78 ms

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Coloring options: Nucleotide numbers

Motif IL_58835.1 Version IL_58835.1 of this group appears in releases 3.95 to 3.95 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_58835.1 Version IL_58835.1 of this group appears in releases 3.95 to 3.95

Download

Csv

Json