RNA 3D Hub //

Motif IL_60676.1 Version IL_60676.1 of this group appears in releases 3.12 to 3.14

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-53-4
1 IL_5TBW_0705TBW0.77850Single stack bend1 LSU rRNAG1776U1777G1778*C1670C1671cWWcWW
2 IL_4UYK_0024UYK0.57640Not an internal loopRSRP RNAG78C79G80*C121C122ncwWcWW
3 IL_4Y4O_2344Y4O0.56570Single stack bend (H)2A LSU rRNAG1448A1449G1450*C1462C1463cWWcWW
4 IL_5J7L_2695J7L0.64380Single stack bendDA LSU rRNAG926A927A928*U850C851cWWcWW
5 IL_4LFB_0534LFB0.51030Not an internal loopA SSU rRNAG1274A1275G1276*C1259C1260ncWWntHScWW
6 IL_4IOA_0664IOA0.40371Minor groove platform, major groove intercalation (H)X LSU rRNAC1829G1831G1832*C1885G1886cWWcWW
7 IL_4V9F_0664V9F0.34151Minor groove platform, major groove intercalation0 LSU rRNAC1893A1895G1896*C1943G1944cWWcWW
8 IL_4Y4O_2444Y4O0.44121Minor groove platform, major groove intercalation (H)2A LSU rRNAC1837G1839G1840*C1902G1903cWWcWW
9 IL_5TBW_0845TBW0.35441Major groove intercalation1 LSU rRNAC2196A2198G2199*C2245G2246cWWcWW
10 IL_4IOA_1064IOA0.00001Y 5S rRNAG53C55G56*C32C33cWWntHScWW
11 IL_4TS2_0024TS20.35783Minor groove platformY+XSpinach aptamer RNA, bimolecular constructU82A84C85*G14A17cWWcWScWW
12 IL_5TBW_3745TBW0.45541Minor groove platformAS 5S rRNAG49A51G52*C28C29cWWcWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAG*CC2
CCGG*CG2
CCAG*CG2
GUG*CC1
GCG*CC1
GAA*UC1
GUCG*CC1
UAAC*GAAA1
GUAG*CC1
Non-Watson-Crick part of the motif
SequenceCounts
A*3
CG*2
CA*2
U*1
C*1
UC*1
AA*AA1
UA*1

Release history

Release3.123.133.14
Date2018-11-162018-12-142019-01-11
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform, major groove intercalation (H) (2)
  • Not an internal loop (2)
  • Minor groove platform (2)
  • Single stack bend (2)
  • (1)
  • Minor groove platform, major groove intercalation (1)
  • Single stack bend (H) (1)
  • Major groove intercalation (1)
    • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.12 | Avg 0.54 | Max 0.98
    Help

    Coloring options:

    IL_5TBW_070:IL_5TBW_070 = 0IL_5TBW_070:IL_4UYK_002 = 0.3851IL_5TBW_070:IL_4Y4O_234 = 0.6023IL_5TBW_070:IL_5J7L_269 = 0.4583IL_5TBW_070:IL_4LFB_053 = 0.6327IL_5TBW_070:IL_4IOA_066 = 0.8268IL_5TBW_070:IL_4V9F_066 = 0.8877IL_5TBW_070:IL_4Y4O_244 = 0.9777IL_5TBW_070:IL_5TBW_084 = 0.8897IL_5TBW_070:IL_4IOA_106 = 0.7785IL_5TBW_070:IL_4TS2_002 = 0.9492IL_5TBW_070:IL_5TBW_374 = 0.954IL_4UYK_002:IL_5TBW_070 = 0.3851IL_4UYK_002:IL_4UYK_002 = 0IL_4UYK_002:IL_4Y4O_234 = 0.4349IL_4UYK_002:IL_5J7L_269 = 0.4591IL_4UYK_002:IL_4LFB_053 = 0.469IL_4UYK_002:IL_4IOA_066 = 0.7262IL_4UYK_002:IL_4V9F_066 = 0.7595IL_4UYK_002:IL_4Y4O_244 = 0.8424IL_4UYK_002:IL_5TBW_084 = 0.7422IL_4UYK_002:IL_4IOA_106 = 0.5764IL_4UYK_002:IL_4TS2_002 = 0.7348IL_4UYK_002:IL_5TBW_374 = 0.7127IL_4Y4O_234:IL_5TBW_070 = 0.6023IL_4Y4O_234:IL_4UYK_002 = 0.4349IL_4Y4O_234:IL_4Y4O_234 = 0IL_4Y4O_234:IL_5J7L_269 = 0.4021IL_4Y4O_234:IL_4LFB_053 = 0.468IL_4Y4O_234:IL_4IOA_066 = 0.7451IL_4Y4O_234:IL_4V9F_066 = 0.7405IL_4Y4O_234:IL_4Y4O_244 = 0.8131IL_4Y4O_234:IL_5TBW_084 = 0.7118IL_4Y4O_234:IL_4IOA_106 = 0.5657IL_4Y4O_234:IL_4TS2_002 = 0.612IL_4Y4O_234:IL_5TBW_374 = 0.5753IL_5J7L_269:IL_5TBW_070 = 0.4583IL_5J7L_269:IL_4UYK_002 = 0.4591IL_5J7L_269:IL_4Y4O_234 = 0.4021IL_5J7L_269:IL_5J7L_269 = 0IL_5J7L_269:IL_4LFB_053 = 0.4854IL_5J7L_269:IL_4IOA_066 = 0.7608IL_5J7L_269:IL_4V9F_066 = 0.7955IL_5J7L_269:IL_4Y4O_244 = 0.9196IL_5J7L_269:IL_5TBW_084 = 0.8214IL_5J7L_269:IL_4IOA_106 = 0.6438IL_5J7L_269:IL_4TS2_002 = 0.7487IL_5J7L_269:IL_5TBW_374 = 0.7439IL_4LFB_053:IL_5TBW_070 = 0.6327IL_4LFB_053:IL_4UYK_002 = 0.469IL_4LFB_053:IL_4Y4O_234 = 0.468IL_4LFB_053:IL_5J7L_269 = 0.4854IL_4LFB_053:IL_4LFB_053 = 0IL_4LFB_053:IL_4IOA_066 = 0.5183IL_4LFB_053:IL_4V9F_066 = 0.5747IL_4LFB_053:IL_4Y4O_244 = 0.6655IL_4LFB_053:IL_5TBW_084 = 0.5694IL_4LFB_053:IL_4IOA_106 = 0.5103IL_4LFB_053:IL_4TS2_002 = 0.6602IL_4LFB_053:IL_5TBW_374 = 0.6273IL_4IOA_066:IL_5TBW_070 = 0.8268IL_4IOA_066:IL_4UYK_002 = 0.7262IL_4IOA_066:IL_4Y4O_234 = 0.7451IL_4IOA_066:IL_5J7L_269 = 0.7608IL_4IOA_066:IL_4LFB_053 = 0.5183IL_4IOA_066:IL_4IOA_066 = 0IL_4IOA_066:IL_4V9F_066 = 0.1843IL_4IOA_066:IL_4Y4O_244 = 0.2745IL_4IOA_066:IL_5TBW_084 = 0.2225IL_4IOA_066:IL_4IOA_106 = 0.4037IL_4IOA_066:IL_4TS2_002 = 0.5554IL_4IOA_066:IL_5TBW_374 = 0.6362IL_4V9F_066:IL_5TBW_070 = 0.8877IL_4V9F_066:IL_4UYK_002 = 0.7595IL_4V9F_066:IL_4Y4O_234 = 0.7405IL_4V9F_066:IL_5J7L_269 = 0.7955IL_4V9F_066:IL_4LFB_053 = 0.5747IL_4V9F_066:IL_4IOA_066 = 0.1843IL_4V9F_066:IL_4V9F_066 = 0IL_4V9F_066:IL_4Y4O_244 = 0.1691IL_4V9F_066:IL_5TBW_084 = 0.1318IL_4V9F_066:IL_4IOA_106 = 0.3415IL_4V9F_066:IL_4TS2_002 = 0.4681IL_4V9F_066:IL_5TBW_374 = 0.5821IL_4Y4O_244:IL_5TBW_070 = 0.9777IL_4Y4O_244:IL_4UYK_002 = 0.8424IL_4Y4O_244:IL_4Y4O_234 = 0.8131IL_4Y4O_244:IL_5J7L_269 = 0.9196IL_4Y4O_244:IL_4LFB_053 = 0.6655IL_4Y4O_244:IL_4IOA_066 = 0.2745IL_4Y4O_244:IL_4V9F_066 = 0.1691IL_4Y4O_244:IL_4Y4O_244 = 0IL_4Y4O_244:IL_5TBW_084 = 0.1198IL_4Y4O_244:IL_4IOA_106 = 0.4412IL_4Y4O_244:IL_4TS2_002 = 0.5439IL_4Y4O_244:IL_5TBW_374 = 0.6345IL_5TBW_084:IL_5TBW_070 = 0.8897IL_5TBW_084:IL_4UYK_002 = 0.7422IL_5TBW_084:IL_4Y4O_234 = 0.7118IL_5TBW_084:IL_5J7L_269 = 0.8214IL_5TBW_084:IL_4LFB_053 = 0.5694IL_5TBW_084:IL_4IOA_066 = 0.2225IL_5TBW_084:IL_4V9F_066 = 0.1318IL_5TBW_084:IL_4Y4O_244 = 0.1198IL_5TBW_084:IL_5TBW_084 = 0IL_5TBW_084:IL_4IOA_106 = 0.3544IL_5TBW_084:IL_4TS2_002 = 0.4795IL_5TBW_084:IL_5TBW_374 = 0.5642IL_4IOA_106:IL_5TBW_070 = 0.7785IL_4IOA_106:IL_4UYK_002 = 0.5764IL_4IOA_106:IL_4Y4O_234 = 0.5657IL_4IOA_106:IL_5J7L_269 = 0.6438IL_4IOA_106:IL_4LFB_053 = 0.5103IL_4IOA_106:IL_4IOA_066 = 0.4037IL_4IOA_106:IL_4V9F_066 = 0.3415IL_4IOA_106:IL_4Y4O_244 = 0.4412IL_4IOA_106:IL_5TBW_084 = 0.3544IL_4IOA_106:IL_4IOA_106 = 0IL_4IOA_106:IL_4TS2_002 = 0.3578IL_4IOA_106:IL_5TBW_374 = 0.4554IL_4TS2_002:IL_5TBW_070 = 0.9492IL_4TS2_002:IL_4UYK_002 = 0.7348IL_4TS2_002:IL_4Y4O_234 = 0.612IL_4TS2_002:IL_5J7L_269 = 0.7487IL_4TS2_002:IL_4LFB_053 = 0.6602IL_4TS2_002:IL_4IOA_066 = 0.5554IL_4TS2_002:IL_4V9F_066 = 0.4681IL_4TS2_002:IL_4Y4O_244 = 0.5439IL_4TS2_002:IL_5TBW_084 = 0.4795IL_4TS2_002:IL_4IOA_106 = 0.3578IL_4TS2_002:IL_4TS2_002 = 0IL_4TS2_002:IL_5TBW_374 = 0.3967IL_5TBW_374:IL_5TBW_070 = 0.954IL_5TBW_374:IL_4UYK_002 = 0.7127IL_5TBW_374:IL_4Y4O_234 = 0.5753IL_5TBW_374:IL_5J7L_269 = 0.7439IL_5TBW_374:IL_4LFB_053 = 0.6273IL_5TBW_374:IL_4IOA_066 = 0.6362IL_5TBW_374:IL_4V9F_066 = 0.5821IL_5TBW_374:IL_4Y4O_244 = 0.6345IL_5TBW_374:IL_5TBW_084 = 0.5642IL_5TBW_374:IL_4IOA_106 = 0.4554IL_5TBW_374:IL_4TS2_002 = 0.3967IL_5TBW_374:IL_5TBW_374 = 0IL_5TBW_070IL_4UYK_002IL_4Y4O_234IL_5J7L_269IL_4LFB_053IL_4IOA_066IL_4V9F_066IL_4Y4O_244IL_5TBW_084IL_4IOA_106IL_4TS2_002IL_5TBW_374Discrepancy0.000.200.400.600.80
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