Motif IL_60695.4 Version IL_60695.4 of this group appears in releases 3.46 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 3-4 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5VW1_001 | 5VW1 | 0.1141 | 2 | C | sgRNA | A | 26 | G | 27 | G | 29 | * | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | cWW | cWW |
| 2 | IL_4ZT0_003 | 4ZT0 | 0.0904 | 2 | D | single-guide RNA | A | 26 | G | 27 | G | 29 | * | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | cWW | cWW |
| 3 | IL_5B2T_001 | 5B2T | 0.0000 | 2 | A | Guide RNA | A | 26 | G | 27 | G | 29 | * | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | cWW | cWW |
| 4 | IL_5FQ5_001 | 5FQ5 | 0.0569 | 2 | A | SGRNA | A | 26 | G | 27 | G | 29 | * | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | cWW | cWW |
| 5 | IL_5F9R_001 | 5F9R | 0.1183 | 2 | A | RNA (116-MER) | A | 26 | G | 27 | G | 29 | * | C | 58 | A | 59 | A | 60 | G | 61 | U | 63 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAG*CAAGUU | 5 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*AAGU | 5 |
- Annotations
-
- (5)
- Basepair signature
- cWW-L-R-R-R-cWW
- Heat map statistics
- Min 0.06 | Avg 0.09 | Max 0.15
Coloring options: