Motif IL_61299.1 Version IL_61299.1 of this group appears in releases 3.89 to 3.89

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9	1-9	2-6	2-8	6-7
1	IL_8D29_011	8D29	0.9069		F	RNA (34-MER)	G	20	C	21	C	22	C	23	U	24	U	25	*	A	10	G	11	C	12	cWW		ncWW	cWW
2	IL_5UNE_008	5UNE	0.7900	Isolated basepair with bulged bases	A+B	RNA (47-MER)	C	33	G	34	G	35	A	36	A	37	A	38	*	U	10	G	11	G	12	ncWW		ntSH	cWW
3	IL_4V88_389	4V88	0.0000		A6	SSU rRNA	U	58	C	59	U	60	A	61	A	62	G	63	*	C	87	U	88	G	89	cWW	ncWH		cWW
4	IL_8C3A_397	8C3A	0.1753		CM	SSU rRNA	U	58	C	59	U	60	A	61	A	62	G	63	*	C	87	U	88	G	89	cWW	ncWH		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCUAAG*CUG	2
GCCCUU*AGC	1
CGGAAA*UGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUAA*U	2
CCCU*G	1
GGAA*G	1

Release history

Release	3.89
Date	2024-10-09
Status	New id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Isolated basepair with bulged bases (1)
Basepair signature: cWW-L-R-L-cWW-L-L
Heat map statistics: Min 0.18 | Avg 0.54 | Max 0.93

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