Motif IL_61299.3 Version IL_61299.3 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 2-6 | 2-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5UNE_008 | 5UNE | 0.7844 | 0 | Isolated basepair with bulged bases | A+B | RNA (47-MER) | C | 33 | G | 34 | G | 35 | A | 36 | A | 37 | A | 38 | * | U | 10 | G | 11 | G | 12 | ncWW | ntSH | cWW | |
| 2 | IL_8P9A_378 | 8P9A | 0.0000 | 0 | sR | SSU rRNA | U | 58 | C | 59 | U | 60 | A | 61 | A | 62 | G | 63 | * | C | 87 | U | 88 | G | 89 | cWW | ncWH | cWW | ||
| 3 | IL_8C3A_397 | 8C3A | 0.1737 | 0 | CM | SSU rRNA | U | 58 | C | 59 | U | 60 | A | 61 | A | 62 | G | 63 | * | C | 87 | U | 88 | G | 89 | cWW | ncWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAG*CUG | 2 |
| CGGAAA*UGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*U | 2 |
| GGAA*G | 1 |
- Annotations
-
- (2)
- Isolated basepair with bulged bases (1)
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Heat map statistics
- Min 0.17 | Avg 0.40 | Max 0.83
Coloring options: