Motif IL_61299.9 Version IL_61299.9 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 2-6 | 2-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5UNE_008 | 5UNE | 0.8069 | 0 | Isolated basepair with bulged bases | A+B | RNA (47-MER) | C | 33 | G | 34 | G | 35 | A | 36 | A | 37 | A | 38 | * | U | 10 | G | 11 | G | 12 | ncWW | ntSH | cWW | |
| 2 | IL_9H3G_160 | 9H3G | 0.1301 | 0 | h1 | SSU rRNA | U | 58 | G | 59 | U | 60 | A | 61 | A | 62 | G | 63 | * | C | 88 | U | 89 | G | 90 | cWW | cWH | cWW | ||
| 3 | IL_9PN5_147 | 9PN5 | 0.0800 | 0 | B5 | SSU rRNA | U | 58 | C | 59 | U | 60 | A | 61 | A | 62 | G | 63 | * | C | 87 | U | 88 | G | 89 | cWW | ncWH | cWW | ||
| 4 | IL_9SUM_142 | 9SUM | 0.0000 | 0 | CA | SSU rRNA | U | 58 | C | 59 | U | 60 | A | 61 | A | 62 | G | 63 | * | C | 86 | U | 87 | G | 88 | cWW | ncWH | cWW | ||
| 5 | IL_8GLP_193 | 8GLP | 0.0769 | 0 | S2 | SSU rRNA | U | 57 | C | 58 | U | 59 | A | 60 | A | 61 | G | 62 | * | C | 86 | U | 87 | G | 88 | cWW | ncWH | cWW | ||
| 6 | IL_8CRE_395 | 8CRE | 0.1294 | 0 | CM | SSU rRNA | U | 58 | C | 59 | U | 60 | A | 61 | A | 62 | G | 63 | * | C | 87 | U | 88 | G | 89 | cWW | ncWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAG*CUG | 4 |
| CGGAAA*UGG | 1 |
| UGUAAG*CUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*U | 4 |
| GGAA*G | 1 |
| GUAA*U | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Isolated basepair with bulged bases (1)
- Basepair signature
- cWW-cWH-R-L-cWW-L-L
- Heat map statistics
- Min 0.08 | Avg 0.29 | Max 0.83
Coloring options: