Motif IL_61502.1 Version IL_61502.1 of this group appears in releases 3.20 to 3.26
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4Y4O_276 | 4Y4O | 0.4415 | 1 | 2A | LSU rRNA | C | 2591 | G | 2592 | * | C | 2601 | G | 2603 | cWW | cWW | |
| 2 | IL_5CNR_002 | 5CNR | 0.3298 | 1 | Single bulged A | A+B | RNA (16-mer) + RNA (11-mer) | C | 12 | C | 13 | * | G | 38 | G | 40 | cWW | cWW |
| 3 | IL_4Y4O_245 | 4Y4O | 0.2317 | 2 | Major groove intercalation (H) | 2A | LSU rRNA | U | 1841 | G | 1842 | * | U | 1898 | A | 1901 | cWW | cWW |
| 4 | IL_6JQ5_004 | 6JQ5 | 0.0945 | 1 | B | RNA (82-MER) | G | 31 | G | 32 | * | U | 62 | C | 64 | cWW | cWW | |
| 5 | IL_4WF9_106 | 4WF9 | 0.0000 | 1 | Major groove intercalation | X | LSU rRNA | G | 2858 | G | 2859 | * | U | 2898 | C | 2900 | cWW | cWW |
| 6 | IL_4Y4O_238 | 4Y4O | 0.2439 | 1 | Single bulged A (H) | 2A | LSU rRNA | C | 1499 | G | 1500 | * | U | 1489 | G | 1491 | cWW | cWW |
| 7 | IL_5J7L_355 | 5J7L | 0.3375 | 1 | Major groove intercalation | DB | 5S rRNA | C | 17 | G | 18 | * | U | 65 | G | 67 | cWW | cWW |
| 8 | IL_4WF9_112 | 4WF9 | 0.3438 | 1 | Major groove intercalation | Y | 5S rRNA | C | 15 | A | 16 | * | U | 63 | G | 65 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UAG | 2 |
| CG*CAG | 1 |
| CC*GAG | 1 |
| UG*UGAA | 1 |
| GG*UGC | 1 |
| GG*UAC | 1 |
| CA*UAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 6 |
| *GA | 1 |
| *G | 1 |
Release history
| Release | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 |
|---|---|---|---|---|---|---|---|
| Date | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove intercalation (3)
- (2)
- Single bulged A (H) (1)
- Major groove intercalation (H) (1)
- Single bulged A (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.32 | Max 0.71
Coloring options: