Motif IL_64125.2 Version IL_64125.2 of this group appears in releases 3.3 to 3.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 1-8 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4P97_001 | 4P97 | 0.5081 | 2 | A+B | RNA (16-mer) + RNA (11-mer) | C | 5 | U | 6 | A | 7 | C | 8 | A | 11 | C | 12 | * | G | 40 | G | 41 | cWW | cWW |
| 2 | IL_3P59_001 | 3P59 | 0.0000 | 1 | A+B | RNA (15-mer) + RNA (10-mer) | G | 52 | A | 53 | A | 54 | C | 55 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
| 3 | IL_2PN3_002 | 2PN3 | 0.2057 | 1 | A+B | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAACUAC*GC | 2 |
| CUACCCAC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACUA* | 2 |
| UACCCA* | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-L-L-L-cWW
- Heat map statistics
- Min 0.21 | Avg 0.28 | Max 0.55
Coloring options: