Motif IL_64824.1 Version IL_64824.1 of this group appears in releases 3.18 to 3.19
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CZR_154 | 6CZR | 0.7827 | 2 | 1a | SSU rRNA | U | 1035 | A | 1038 | U | 1039 | * | A | 1186 | U | 1187 | G | 1188 | cWW | ncWS | ncWS | ||
| 2 | IL_4R4V_012 | 4R4V | 0.0000 | 2 | A | VS ribozyme RNA | G | 724||||7_556 | A | 725||||7_556 | C | 726||||7_556 | * | G | 749||||7_556 | G | 752||||7_556 | C | 753||||7_556 | cWW | cWW | cWW | ||
| 3 | IL_4R4V_006 | 4R4V | 0.0000 | 2 | Isolated non-canonical cWW pair | A | VS ribozyme RNA | G | 724 | A | 725 | C | 726 | * | G | 749 | G | 752 | C | 753 | cWW | cWW | cWW | |
| 4 | IL_5TBW_103 | 5TBW | 0.3533 | 0 | Isolated non-canonical cWW pair | 1 | LSU rRNA | G | 2863 | A | 2864 | U | 2865 | * | G | 2824 | C | 2825 | U | 2826 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAC*GCAGC | 2 |
| UGCAU*AUG | 1 |
| GAU*GCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*CAG | 2 |
| GCA*U | 1 |
| A*C | 1 |
- Annotations
-
- Isolated non-canonical cWW pair (2)
- (2)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.35 | Avg 0.40 | Max 0.94
Coloring options: