Motif IL_65006.1 Version IL_65006.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-2 | 1-7 | 2-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3MXH_001 | 3MXH | 0.7975 | 1 | Minor groove platform with extra cWW | R | c-di-GMP riboswitch | G | 94 | A | 95 | G | 97 | G | 98 | * | C | 11 | A | 12 | C | 13 | cWW | cWW | cWW | ||
| 2 | IL_4WF9_003 | 4WF9 | 0.5228 | 0 | Minor groove platform with extra cWW | X | LSU rRNA | U | 480 | C | 481 | U | 482 | C | 483 | * | G | 42 | A | 43 | A | 44 | cSH | cWW | cWW | ||
| 3 | IL_8C3A_092 | 8C3A | 0.4391 | 1 | 1 | LSU rRNA | G | 2184 | A | 2186 | U | 2187 | G | 2188 | * | C | 2213 | G | 2214 | C | 2215 | tSW | cWW | cWW | |||
| 4 | IL_8C3A_432 | 8C3A | 0.0000 | 1 | CM | SSU rRNA | U | 778 | A | 780 | G | 781 | C | 782 | * | G | 736 | A | 737 | A | 738 | ncSH | ncWW | cWW | cWW | ||
| 5 | IL_5J7L_006 | 5J7L | 0.3718 | 0 | Minor groove platform with extra cWW | AA | SSU rRNA | C | 99 | G | 100 | A | 101 | G | 102 | * | C | 67 | G | 68 | G | 69 | cWW | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUGG*CAC | 1 |
| UCUC*GAA | 1 |
| GAAUG*CGC | 1 |
| UUAGC*GAA | 1 |
| CGAG*CGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUG*A | 1 |
| CU*A | 1 |
| AAU*G | 1 |
| UAG*A | 1 |
| GA*G | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform with extra cWW (3)
- (2)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.37 | Avg 0.45 | Max 0.80
Coloring options: