Motif IL_65006.1 Version IL_65006.1 of this group appears in releases 3.80 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7	1-2	1-7	2-7	3-6	4-5
1	IL_3MXH_001	3MXH	0.7975	1	Minor groove platform with extra cWW	R	c-di-GMP riboswitch	G	94	A	95	G	97	G	98	*	C	11	A	12	C	13		cWW		cWW	cWW
2	IL_4WF9_003	4WF9	0.5228	0	Minor groove platform with extra cWW	X	LSU rRNA	U	480	C	481	U	482	C	483	*	G	42	A	43	A	44	cSH	cWW			cWW
3	IL_8C3A_092	8C3A	0.4391	1		1	LSU rRNA	G	2184	A	2186	U	2187	G	2188	*	C	2213	G	2214	C	2215	tSW	cWW			cWW
4	IL_8C3A_432	8C3A	0.0000	1		CM	SSU rRNA	U	778	A	780	G	781	C	782	*	G	736	A	737	A	738	ncSH	ncWW		cWW	cWW
5	IL_5J7L_006	5J7L	0.3718	0	Minor groove platform with extra cWW	AA	SSU rRNA	C	99	G	100	A	101	G	102	*	C	67	G	68	G	69		cWW	tHS	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUGG*CAC	1
UCUC*GAA	1
GAAUG*CGC	1
UUAGC*GAA	1
CGAG*CGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUG*A	1
CU*A	1
AAU*G	1
UAG*A	1
GA*G	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86	3.87
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17	2024-08-14
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Minor groove platform with extra cWW (3)
(2)
Basepair signature: cWW-L-cWW-cWW
Heat map statistics: Min 0.37 | Avg 0.45 | Max 0.80

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