Motif IL_65720.1 Version IL_65720.1 of this group appears in releases 3.27 to 3.27
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_070 | 4V9F | 0.2372 | 2 | Bulged stacked bases | 0 | LSU rRNA | G | 1974 | C | 1975 | * | G | 2005 | U | 2008 | cWW | cWW |
| 2 | IL_4Y4O_249 | 4Y4O | 0.0000 | 2 | Bulged stacked bases (H) | 2A | LSU rRNA | G | 1933 | C | 1934 | * | G | 1964 | C | 1967 | cWW | cWW |
| 3 | IL_4WF9_076 | 4WF9 | 0.1570 | 2 | Bulged stacked bases | X | LSU rRNA | G | 1960 | C | 1961 | * | G | 1991 | C | 1994 | cWW | cWW |
| 4 | IL_4WF9_096 | 4WF9 | 0.7244 | 2 | X | LSU rRNA | C | 2539 | A | 2540 | * | U | 2598 | G | 2601 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GCAC | 2 |
| GC*GCAU | 1 |
| CA*UACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *CA | 3 |
| *AC | 1 |
Release history
| Release | 3.27 |
|---|---|
| Date | 2020-01-08 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Bulged stacked bases (2)
- (1)
- Bulged stacked bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.16 | Avg 0.36 | Max 0.80
Coloring options: