Motif IL_66450.1 Version IL_66450.1 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4YAZ_007 | 4YAZ | 0.5790 | 2 | Multiple bulged bases | R | Cyclic di-GMP-I riboswitch | C | 68 | G | 69 | * | U | 47 | G | 50 | cWW | cWW |
| 2 | IL_5CNR_002 | 5CNR | 0.0000 | 1 | Single bulged A | A+B | RNA (16-mer) + RNA (11-mer) | C | 12 | C | 13 | * | G | 38 | G | 40 | cWW | cWW |
| 3 | IL_4P97_002 | 4P97 | 0.0933 | 1 | Single bulged A | A+B | RNA (16-mer) + RNA (11-mer) | C | 12 | C | 13 | * | G | 38 | G | 40 | cWW | cWW |
| 4 | IL_7A0S_097 | 7A0S | 0.8590 | 3 | Multiple bulged bases | X | LSU rRNA | C | 2674 | U | 2675 | * | A | 2690 | G | 2694 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GAG | 2 |
| CG*UAAG | 1 |
| CU*ACAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 2 |
| *AA | 1 |
| *CAU | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged A (2)
- Multiple bulged bases (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.53 | Max 1.19
Coloring options: