Motif IL_66745.1 Version IL_66745.1 of this group appears in releases 3.12 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 4-8 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_121 | 5TBW | 0.8146 | 0 | 1 | LSU rRNA | G | 3284 | C | 3285 | G | 3286 | U | 3287 | G | 3288 | * | C | 3162 | A | 3163 | C | 3164 | A | 3165 | C | 3166 | cWW | ncWWa | ncWW | ncWW | ncWW | |
| 2 | IL_3IGI_010 | 3IGI | 0.6523 | 0 | A | Group II catalytic intron D1-D4-3 | G | 267 | A | 268 | G | 269 | G | 270 | U | 271 | * | A | 282 | A | 283 | G | 284 | U | 285 | C | 286 | cWW | tHW | tHS | cWW | cWW | |
| 3 | IL_3BNN_006 | 3BNN | 0.0000 | 1 | C+D | A site of human ribosome | C | 5 | A | 6 | C | 7 | C | 8 | C | 9 | * | G | 12 | A | 13 | C | 14 | A | 15 | G | 17 | cWW | ncBW | cWWa | cWW | ||
| 4 | IL_3BNN_007 | 3BNN | 0.2009 | 1 | D+C | A site of human ribosome | C | 5 | A | 6 | C | 7 | C | 8 | C | 9 | * | G | 12 | A | 13 | C | 14 | A | 15 | G | 17 | cWW | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACCC*GACAAG | 2 |
| GCGUG*CACAC | 1 |
| GAGGU*AAGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACC*ACAA | 2 |
| CGU*ACA | 1 |
| AGG*AGU | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-tHS-cWW-cWW
- Heat map statistics
- Min 0.20 | Avg 0.49 | Max 0.87
Coloring options: