Motif IL_66750.1 Version IL_66750.1 of this group appears in releases 3.3 to 3.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-3 | 1-8 | 2-4 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4R0D_001 | 4R0D | 0.9728 | 1 | A | Group II catalytic intron | G | 10 | A | 11 | A | 12 | G | 13 | U | 14 | * | G | 339 | A | 340 | C | 342 | ntSW | cWW | cWW | cWW | ||
| 2 | IL_4V9F_084 | 4V9F | 0.0000 | 0 | Major groove minor groove platform with extra cWW | 0 | LSU rRNA | G | 2524 | G | 2525 | C | 2526 | U | 2527 | U | 2528 | * | G | 2494 | U | 2495 | C | 2496 | cWW | cSH | cWw | cWW | |
| 3 | IL_5J7L_337 | 5J7L | 0.3233 | 0 | Major groove minor groove platform with extra cWW | DA | LSU rRNA | U | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | * | A | 2459 | U | 2460 | A | 2461 | cWW | cSH | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGU*GAAC | 1 |
| GGCUU*GUC | 1 |
| UGUUU*AUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAG*AA | 1 |
| GCU*U | 1 |
| GUU*U | 1 |
- Annotations
-
- Major groove minor groove platform with extra cWW (2)
- (1)
- Basepair signature
- cWW-bif-cSH-L-cWW-cWW
- Heat map statistics
- Min 0.32 | Avg 0.51 | Max 1.00
Coloring options: