Motif IL_66750.2 Version IL_66750.2 of this group appears in releases 3.8 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | 5-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_337 | 5J7L | 0.2860 | 0 | Major groove minor groove platform with extra cWW | DA | LSU rRNA | A | 2459 | U | 2460 | A | 2461 | * | U | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | cWW | cwW | cWW | cSH |
| 2 | IL_4IOA_088 | 4IOA | 0.0000 | 0 | Major groove minor groove platform with extra cWW (H) | X | LSU rRNA | A | 2438 | U | 2439 | C | 2440 | * | G | 2468 | G | 2469 | U | 2470 | U | 2471 | U | 2472 | cWW | cwW | cWW | cSH |
| 3 | IL_4V9F_084 | 4V9F | 0.1954 | 0 | Major groove minor groove platform with extra cWW | 0 | LSU rRNA | G | 2494 | U | 2495 | C | 2496 | * | G | 2524 | G | 2525 | C | 2526 | U | 2527 | U | 2528 | cWW | cwW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUA*UGUUU | 1 |
| AUC*GGUUU | 1 |
| GUC*GGCUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*GUU | 2 |
| U*GCU | 1 |
- Annotations
-
- Major groove minor groove platform with extra cWW (2)
- Major groove minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-cWW-bif-cSH-R-cWW
- Heat map statistics
- Min 0.20 | Avg 0.18 | Max 0.32
Coloring options: