Motif IL_66997.1 Version IL_66997.1 of this group appears in releases 3.89 to 3.89

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8	1-2	1-8	2-8	3-8	4-7	5-6
1	IL_4LFB_066	4LFB	0.5223	1	A	SSU rRNA	C	1128	A	1130	G	1131	C	1132	G	1133	*	C	1141	G	1142	G	1143		cWW		ncWS	ncWW	cWW
2	IL_5J7L_013	5J7L	0.0000	0	AA	SSU rRNA	G	203	G	204	A	205	C	206	C	207	*	G	212	G	213	C	214		cWW				cWW
3	IL_4YAZ_005	4YAZ	0.5243	1	R	Cyclic di-GMP-I riboswitch	G	77	A	78	A	79	A	80	U	81	*	A	4	A	6	C	7	cSH	cWW	ntHS	cWS		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCAGCG*CGG	1
GGACC*GGC	1
GAAAU*ACAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAGC*G	1
GAC*G	1
AAA*CA	1

Release history

Release	3.89
Date	2024-10-09
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-cWS-L-R-cWW-L
Heat map statistics: Min 0.52 | Avg 0.35 | Max 0.53

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