Motif IL_67095.1 Version IL_67095.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9DFE_055 | 9DFE | 0.6352 | 1 | 1A | LSU rRNA | U | 1433 | A | 1434 | G | 1435 | * | C | 1557 | A | 1558 | G | 1560 | cWW | tWW | cWW | |
| 2 | IL_9DFE_064 | 9DFE | 0.0000 | 0 | 1A | LSU rRNA | C | 1663 | A | 1664 | A | 1665 | * | U | 1995 | C | 1996 | G | 1997 | cWW | tWW | cWW | |
| 3 | IL_5J7L_305 | 5J7L | 0.0897 | 0 | Isolated tWW turn | DA | LSU rRNA | G | 1663 | A | 1664 | A | 1665 | * | U | 1995 | C | 1996 | C | 1997 | cWW | tWW | cWW |
| 4 | IL_7A0S_060 | 7A0S | 0.1001 | 0 | Isolated tWW turn | X | LSU rRNA | U | 1680 | A | 1681 | A | 1682 | * | U | 1978 | C | 1979 | A | 1980 | cWW | tWW | cWW |
| 5 | IL_4WF9_063 | 4WF9 | 0.0980 | 0 | Isolated tWW turn | X | LSU rRNA | U | 1707 | A | 1708 | A | 1709 | * | U | 2022 | C | 2023 | A | 2024 | cWW | tWW | cWW |
| 6 | IL_8P9A_303 | 8P9A | 0.1116 | 0 | AR | LSU rRNA | A | 1895 | A | 1896 | G | 1897 | * | C | 2338 | C | 2339 | U | 2340 | cWW | tWW | cWW | |
| 7 | IL_4V9F_060 | 4V9F | 0.1378 | 0 | Isolated tWW turn | 0 | LSU rRNA | U | 1741 | A | 1742 | G | 1743 | * | C | 2036 | C | 2037 | A | 2038 | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAA*UCA | 2 |
| UAG*CAGG | 1 |
| CAA*UCG | 1 |
| GAA*UCC | 1 |
| AAG*CCU | 1 |
| UAG*CCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*C | 6 |
| A*AG | 1 |
- Annotations
-
- Isolated tWW turn (4)
- (3)
- Basepair signature
- cWW-cWW-cWS-tSH-L-L-cWW-tSS-tSH-L-R-L-L
- Heat map statistics
- Min 0.09 | Avg 0.23 | Max 0.70
Coloring options: