#SLoop idPDBDisc#Non-coreChain(s) 1 2 3 4 5break 6 7 8 9 10 111-112-103-94-54-75-65-96-9
1 IL_2QBG_0092QBG0.00003BG81U82A83A84G85*C97G98U99A103A104C105cWWncSWntSHtSscWWtsScsS
2 IL_3UXR_0833UXR0.49559AG2123G2124G2125A2126G2127*C2161G2162C2163A2173C2174C2175cWWncWWntSHncsSntSscWWntsS

3D structures

Complete motif including flanking bases
SequenceCounts
GUAAG*CGUUAUAAC1
GGGAG*CGCCGGUGAAAUACC1
Non-Watson-Crick part of the motif
SequenceCounts
UAA*GUUAUAA1
GGA*GCCGGUGAAAUAC1

Release history

Release0.6
Date2012-04-02
StatusNew id, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_67117.1Only in the parent motif
IL_59424.1
Compare
IL_2QBG_009IL_3UXR_083

Children motifs

Child motifCommon motif instancesOnly in IL_67117.1Only in the child motif
IL_89794.1
Compare
IL_2QBG_009IL_3UXR_083
Annotations
  • (2)
  • Basepair signature
    11_cWW--tSH-cSS-cWW,tSS
    Heat map statistics
    Min 0.50 | Avg 0.25 | Max 0.50
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.3638 s