Motif IL_67117.1 Version IL_67117.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-5 | 4-7 | 5-6 | 5-9 | 6-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_009 | 2QBG | 0.0000 | 3 | B | LSU rRNA | G | 81 | U | 82 | A | 83 | A | 84 | G | 85 | * | C | 97 | G | 98 | U | 99 | A | 103 | A | 104 | C | 105 | cWW | ncSW | ntSH | tSs | cWW | tsS | csS | |
| 2 | IL_3UXR_083 | 3UXR | 0.4955 | 9 | A | LSU rRNA | G | 2123 | G | 2124 | G | 2125 | A | 2126 | G | 2127 | * | C | 2161 | G | 2162 | C | 2163 | A | 2173 | C | 2174 | C | 2175 | cWW | ncWW | ntSH | ncsS | ntSs | cWW | ntsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAAG*CGUUAUAAC | 1 |
| GGGAG*CGCCGGUGAAAUACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GUUAUAA | 1 |
| GGA*GCCGGUGAAAUAC | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_67117.1 | Only in the parent motif |
|---|---|---|---|
| IL_59424.1 Compare | IL_2QBG_009 | IL_3UXR_083 |
Children motifs
| Child motif | Common motif instances | Only in IL_67117.1 | Only in the child motif |
|---|---|---|---|
| IL_89794.1 Compare | IL_2QBG_009 | IL_3UXR_083 |
- Annotations
-
- (2)
- Basepair signature
- 11_cWW--tSH-cSS-cWW,tSS
- Heat map statistics
- Min 0.50 | Avg 0.25 | Max 0.50
Coloring options: