Motif IL_67621.4 Version IL_67621.4 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_476 | 4V88 | 0.9365 | 0 | Other IL | A6 | SSU rRNA | C | 1711 | A | 1712 | G | 1713 | * | U | 1688 | A | 1689 | G | 1690 | ncWW | ncWW | |
| 2 | IL_4V88_450 | 4V88 | 0.5724 | 2 | Isolated cWS basepair | A6 | SSU rRNA | U | 1272 | A | 1275 | U | 1276 | * | A | 1436 | U | 1437 | G | 1438 | cWW | ncWS | cWW |
| 3 | IL_4LFB_044 | 4LFB | 0.5811 | 2 | Isolated cWS basepair | A | SSU rRNA | U | 1052 | A | 1055 | U | 1056 | * | A | 1204 | U | 1205 | G | 1206 | cWW | ncWS | cWW |
| 4 | IL_5J7L_286 | 5J7L | 0.1062 | 1 | Isolated cWS basepair | DA | LSU rRNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW |
| 5 | IL_4WF9_044 | 4WF9 | 0.0000 | 1 | Isolated cWS basepair | X | LSU rRNA | C | 1235 | G | 1236 | U | 1237 | * | A | 1285 | U | 1287 | G | 1288 | cWW | cWS | cWW |
| 6 | IL_4Y4O_221 | 4Y4O | 0.0741 | 1 | Isolated cWS basepair (H) | 2A | LSU rRNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW |
| 7 | IL_7A0S_041 | 7A0S | 0.1202 | 1 | Isolated cWS basepair | X | LSU rRNA | C | 1210 | G | 1211 | U | 1212 | * | A | 1260 | U | 1262 | G | 1263 | cWW | cWS | cWW |
| 8 | IL_4V9F_046 | 4V9F | 0.1595 | 1 | Isolated cWS basepair | 0 | LSU rRNA | C | 1301 | G | 1302 | C | 1303 | * | G | 1351 | C | 1353 | G | 1354 | cWW | cWS | cWW |
| 9 | IL_4TS2_003 | 4TS2 | 0.2899 | 0 | Isolated cWS basepair | Y+X | Spinach aptamer RNA, bimolecular construct | C | 80 | G | 81 | U | 82 | * | A | 17 | U | 18 | G | 19 | cWW | ncWS | cWW |
| 10 | IL_4Y4O_207 | 4Y4O | 0.3113 | 0 | Isolated cWS basepair (H) | 2A | LSU rRNA | U | 905 | G | 906 | U | 907 | * | A | 870 | U | 871 | A | 872 | cWW | ncWS | cWW |
| 11 | IL_5TBW_047 | 5TBW | 0.3286 | 0 | Isolated cWS basepair | 1 | LSU rRNA | A | 1133 | G | 1134 | A | 1135 | * | U | 1123 | U | 1124 | U | 1125 | cWW | ncWS | cWW |
| 12 | IL_4WF9_034 | 4WF9 | 0.3760 | 0 | Isolated cWS basepair | X | LSU rRNA | A | 950 | G | 951 | A | 952 | * | U | 915 | U | 916 | U | 917 | cWW | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGU*AGUG | 4 |
| UGCAU*AUG | 2 |
| AGA*UUU | 2 |
| CAG*UAG | 1 |
| CGC*GACG | 1 |
| CGU*AUG | 1 |
| UGU*AUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GU | 4 |
| G*U | 4 |
| GCA*U | 2 |
| A*A | 1 |
| G*AC | 1 |
- Annotations
-
- Isolated cWS basepair (9)
- Isolated cWS basepair (H) (2)
- Other IL (1)
- Basepair signature
- cWW-cWS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.42 | Max 0.97
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