Motif IL_68574.1 Version IL_68574.1 of this group appears in releases 3.54 to 3.57
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7RQB_026 | 7RQB | 0.7942 | 1 | 1A | LSU rRNA | C | 846 | G | 848 | A | 849 | C | 850 | * | G | 927 | G | 928 | U | 930 | G | 931 | cWW | tHS | cWW | |
| 2 | IL_7RQB_046 | 7RQB | 0.0000 | 1 | 1A | LSU rRNA | U | 1240 | A | 1241 | A | 1242 | G | 1243 | * | C | 1202 | G | 1203 | A | 1204 | G | 1206 | cWW | tHH | tHS | cWW |
| 3 | IL_5J7L_299 | 5J7L | 0.2674 | 1 | DA | LSU rRNA | U | 1468 | A | 1469 | A | 1470 | G | 1471 | * | U | 1520 | G | 1521 | A | 1522 | G | 1524 | cWW | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAC*GGUG | 1 |
| UAAG*CGAUG | 1 |
| UAAG*UGAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*GAU | 2 |
| UGA*GU | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tHH-tHS-cWW
- Heat map statistics
- Min 0.27 | Avg 0.43 | Max 0.87
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