Motif IL_69265.1 Version IL_69265.1 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5WTI_001 | 5WTI | 0.0000 | 2 | Other IL | B | RNA (123-MER) | G | 0 | C | 1 | A | 3 | G | 5 | * | C | 25 | A | 26 | A | 27 | C | 28 | cWW | ncWW | cWW |
| 2 | IL_1NUV_003 | 1NUV | 0.5174 | 2 | E+F | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW | |
| 3 | IL_1NUV_001 | 1NUV | 0.5008 | 2 | A+B | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW | |
| 4 | IL_8VTW_108 | 8VTW | 0.6071 | 1 | 1A | LSU rRNA | C | 2870 | C | 2871 | G | 2872 | C | 2874 | * | G | 2843 | G | 2844 | G | 2845 | G | 2846 | cWW | cSW | cWW | |
| 5 | IL_2O3V_002 | 2O3V | 0.6428 | 1 | Decoding loop related | B+A | RNA (23-mer) | A | 38 | A | 39 | A | 41 | G | 42 | * | C | 7 | G | 8 | C | 9 | U | 10 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGAGC*GGAG | 2 |
| GCGAGG*CAAC | 1 |
| CCGAC*GGGG | 1 |
| AAAAG*CGCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAG*GA | 2 |
| CGAG*AA | 1 |
| CGA*GG | 1 |
| AAA*GC | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Decoding loop related (1)
- Other IL (1)
- Basepair signature
- cWW-L-R-L-R-cWW
- Heat map statistics
- Min 0.44 | Avg 0.45 | Max 0.69
Coloring options: