Motif IL_69265.1 Version IL_69265.1 of this group appears in releases 3.87 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-7	4-5
1	IL_5WTI_001	5WTI	0.0000	2	Other IL	B	RNA (123-MER)	G	0	C	1	A	3	G	5	*	C	25	A	26	A	27	C	28	cWW	ncWW	cWW
2	IL_1NUV_003	1NUV	0.5174	2		E+F	RNA (13-mer) + RNA (11-mer)	C	22	C	23	A	25	C	27	*	G	43	G	44	A	45	G	46	cWW	ncWW	cWW
3	IL_1NUV_001	1NUV	0.5008	2		A+B	RNA (13-mer) + RNA (11-mer)	C	22	C	23	A	25	C	27	*	G	43	G	44	A	45	G	46	cWW	ncWW	cWW
4	IL_8VTW_108	8VTW	0.6071	1		1A	LSU rRNA	C	2870	C	2871	G	2872	C	2874	*	G	2843	G	2844	G	2845	G	2846	cWW	cSW	cWW
5	IL_2O3V_002	2O3V	0.6428	1	Decoding loop related	B+A	RNA (23-mer)	A	38	A	39	A	41	G	42	*	C	7	G	8	C	9	U	10	cWW	cWWa	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCGAGC*GGAG	2
GCGAGG*CAAC	1
CCGAC*GGGG	1
AAAAG*CGCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
CGAG*GA	2
CGAG*AA	1
CGA*GG	1
AAA*GC	1

Release history

Release	3.87
Date	2024-08-14
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Decoding loop related (1)
Other IL (1)
Basepair signature: cWW-L-R-L-R-cWW
Heat map statistics: Min 0.44 | Avg 0.45 | Max 0.69

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Coloring options: Nucleotide numbers

Motif IL_69265.1 Version IL_69265.1 of this group appears in releases 3.87 to 3.87 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_69265.1 Version IL_69265.1 of this group appears in releases 3.87 to 3.87

Download

Csv

Json