Motif IL_69507.1 Version IL_69507.1 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CZR_155 | 6CZR | 0.4016 | 2 | Minor groove platform | 1a | SSU rRNA | G | 1040 | G | 1041 | * | U | 1181 | G | 1184 | C | 1185 | cWW | cWW | ntSH | |
| 2 | IL_4TS2_002 | 4TS2 | 0.0000 | 3 | Minor groove platform | X+Y | Spinach aptamer RNA, bimolecular construct | G | 14 | A | 17 | * | U | 82 | A | 84 | C | 85 | cWW | cWW | cSW | |
| 3 | IL_4V88_456 | 4V88 | 0.6765 | 3 | Minor groove platform | A6 | SSU rRNA | A | 1345 | A | 1348 | * | U | 1377 | C | 1379 | U | 1380 | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*UCAGC | 1 |
| GAAA*UAAC | 1 |
| AAUA*UUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *CAG | 1 |
| AA*AA | 1 |
| AU*UC | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (3)
- Basepair signature
- cWW-cSH-cWW
- Heat map statistics
- Min 0.40 | Avg 0.44 | Max 0.92
Coloring options: