Motif IL_70259.1 Version IL_70259.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8	1-7	1-8	2-7	3-6	4-5
1	IL_2GDI_008	2GDI	0.5733	2		Y	TPP riboswitch (THI element)	U	59	G	60	A	61	C	63	*	G	76	C	77	G	78	A	80		cWW	cWH		cWW
2	IL_3D2V_003	3D2V	0.1641	2	cWH basepair and non-canonical AC	A	TPP riboswitch (THI element)	G	64	C	65	G	66	A	68	*	U	47	G	48	A	49	C	51		cWW		cHW	cWW
3	IL_3K0J_003	3K0J	0.0000	2	cWH basepair and non-canonical AC	E	TPP riboswitch (THI element)	G	76	C	77	G	78	A	80	*	U	59	G	60	A	61	C	63		cWW		cHW	cWW
4	IL_4TZZ_015	4TZZ	0.8904	8		I	T-box leader	A	36	U	37	G	38	C	47	*	G	69	G	70	A	71	U	72	ncWB	cWW	ncWW	cHW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAUC*GCGUA	1
GCGCA*UGAAC	1
GCGUA*UGAUC	1
AUGAUUAGCGAC*GGAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAU*CGU	1
CGC*GAA	1
CGU*GAU	1
UGAUUAGCGA*GA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
cWH basepair and non-canonical AC (2)
Basepair signature: cWW-L-R-cHW-cWW
Heat map statistics: Min 0.16 | Avg 0.50 | Max 0.93

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Coloring options: Nucleotide numbers

Motif IL_70259.1 Version IL_70259.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_70259.1 Version IL_70259.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json