Motif IL_70259.1 Version IL_70259.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-7 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2GDI_008 | 2GDI | 0.5733 | 2 | Y | TPP riboswitch (THI element) | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | cWW | |||
| 2 | IL_3D2V_003 | 3D2V | 0.1641 | 2 | cWH basepair and non-canonical AC | A | TPP riboswitch (THI element) | G | 64 | C | 65 | G | 66 | A | 68 | * | U | 47 | G | 48 | A | 49 | C | 51 | cWW | cHW | cWW | ||
| 3 | IL_3K0J_003 | 3K0J | 0.0000 | 2 | cWH basepair and non-canonical AC | E | TPP riboswitch (THI element) | G | 76 | C | 77 | G | 78 | A | 80 | * | U | 59 | G | 60 | A | 61 | C | 63 | cWW | cHW | cWW | ||
| 4 | IL_4TZZ_015 | 4TZZ | 0.8904 | 8 | I | T-box leader | A | 36 | U | 37 | G | 38 | C | 47 | * | G | 69 | G | 70 | A | 71 | U | 72 | ncWB | cWW | ncWW | cHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUC*GCGUA | 1 |
| GCGCA*UGAAC | 1 |
| GCGUA*UGAUC | 1 |
| AUGAUUAGCGAC*GGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAU*CGU | 1 |
| CGC*GAA | 1 |
| CGU*GAU | 1 |
| UGAUUAGCGA*GA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- cWH basepair and non-canonical AC (2)
- Basepair signature
- cWW-L-R-cHW-cWW
- Heat map statistics
- Min 0.16 | Avg 0.50 | Max 0.93
Coloring options: