Motif IL_70401.1 Version IL_70401.1 of this group appears in releases 1.10 to 1.18
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 4-8 | 9-10 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4M4O_003 | 4M4O | 0.0000 | 0 | B | RNA (59-MER) | U | 15 | A | 16 | A | 17 | A | 18 | G | 19 | A | 20 | G | 21 | U | 22 | G | 23 | * | C | 44 | A | 45 | cWW | tWW | cWW |
2 | IL_4M6D_012 | 4M6D | 0.2322 | 0 | H | aptamer | U | 15 | A | 16 | A | 17 | A | 18 | G | 19 | A | 20 | G | 21 | U | 22 | G | 23 | * | C | 44 | A | 45 | ncWW | tWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UAAAGAGUG*CA | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAAGAGU* | 2 |
Release history
Release | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
---|---|---|---|---|---|---|---|---|
Date | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-L-tWW-L-L-L-cWW
- Heat map statistics
- Min 0.23 | Avg 0.12 | Max 0.23
Coloring options: