Motif IL_70995.1 Version IL_70995.1 of this group appears in releases 3.2 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6	1-6	2-3	2-4	2-5	4-5
1	IL_3DIL_004	3DIL	0.4690	0	Major groove platform; stack outside cWW	A	RNA (174-MER)	C	38	A	39	U	40	C	41	*	G	54	G	55	cWW				cWW
2	IL_1NTA_003	1NTA	0.4117	0	Major groove platform; stack outside cWW	A+B	RNA (22-mer) + RNA (18-mer)	C	15	U	16	U	17	C	18	*	G	110	G	111	cWW		ncSH		cWW
3	IL_4IOA_022	4IOA	0.3763	0	Major groove platform; stack outside cWW (H)	X	LSU rRNA	U	857	G	858	U	859	U	860	*	A	944	G	945	cWW				cWW
4	IL_4V9F_061	4V9F	0.2660	0	Major groove platform; stack outside cWW	0	LSU rRNA	G	1744	G	1745	A	1746	A	1747	*	U	2034	C	2035	cWW			tSH	cWW
5	IL_4WF9_064	4WF9	0.2296	0	Major groove platform; stack outside cWW	X	LSU rRNA	G	1710	G	1711	A	1712	A	1713	*	U	2020	C	2021	cWW			tSH	cWW
6	IL_4V8P_238	4V8P	0.2298	0	Major groove platform; stack outside cWW (H)	D1	LSU rRNA	G	1922	G	1923	A	1924	A	1925	*	U	2331	C	2332	cWW			tSH	cWW
7	IL_4V9F_008	4V9F	0.2217	0	Major groove platform; stack outside cWW	0	LSU rRNA	C	245	G	246	A	247	A	248	*	U	265	G	266	cWW			tSH	cWW
8	IL_4V88_428	4V88	0.2145	0	Major groove platform; stack outside cWW	A6	SSU rRNA	C	962	A	963	U	964	U	965	*	A	865	G	866	cWW				cWW
9	IL_4QK8_003	4QK8	0.0000	0		A	C-di-AMP riboswitch	C	89	G	90	A	91	C	92	*	G	39	G	40	cWW		ncSH	tSH	cWW
10	IL_4W90_004	4W90	0.1673	0	Major groove platform; stack outside cWW	C	cyclic di-AMP riboswitch	C	96	G	97	U	98	C	99	*	G	58	G	59	cWW			ntSH	cWW
11	IL_4QK9_003	4QK9	0.2067	0	Major groove platform; stack outside cWW	A	C-di-AMP riboswitch	C	93	G	94	U	95	C	96	*	G	43	G	44	cWW			ntSH	cWW
12	IL_4WF9_049	4WF9	0.3080	0	Major groove platform; stack outside cWW	X	LSU rRNA	G	1347	U	1348	U	1349	U	1350	*	A	1647	C	1648	cWW				cWW
13	IL_4Y4O_226	4Y4O	0.3205	0	Major groove platform; stack outside cWW (H)	2A	LSU rRNA	G	1310	G	1311	U	1312	U	1313	*	A	1603	C	1604	cWW	cSH			cWW
14	IL_4V8P_223	4V8P	0.5748	0		D1	LSU rRNA	G	1518	G	1519	U	1520	U	1521	*	A	1859	C	1860	cWW				cWW
15	IL_5J7L_290	5J7L	0.5846	0	Major groove platform; stack outside cWW	DA	LSU rRNA	G	1310	G	1311	U	1312	U	1313	*	A	1603	C	1604	cWW				cWW
16	IL_4V9F_050	4V9F	0.6187	0	Major groove platform; stack outside cWW	0	LSU rRNA	G	1416	G	1417	U	1418	U	1419	*	A	1678	C	1679	cWW				cWW
17	IL_4IOA_048	4IOA	0.6254	0	Major groove platform; stack outside cWW (H)	X	LSU rRNA	G	1323	G	1324	U	1325	U	1326	*	A	1619	C	1620	cWW				cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUU*AC	5
GGAA*UC	3
CGUC*GG	2
CAUC*GG	1
CUUC*GG	1
UGUU*AG	1
CGAA*UG	1
CAUU*AG	1
CGAC*GG	1
GUUU*AC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GU*	8
GA*	5
AU*	2
UU*	2

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.2	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-09-26	2018-10-19
Status	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	New id, no parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove platform; stack outside cWW (11)
Major groove platform; stack outside cWW (H) (4)
(2)
Basepair signature: cWW-tSH-L-cWW
Heat map statistics: Min 0.10 | Avg 0.41 | Max 0.68

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Coloring options: Nucleotide numbers

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