Motif IL_70995.2 Version IL_70995.2 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 2-3 | 2-4 | 2-5 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3DIL_004 | 3DIL | 0.4690 | 0 | Major groove platform; stack outside cWW | A | Lysine riboswitch | C | 38 | A | 39 | U | 40 | C | 41 | * | G | 54 | G | 55 | cWW | cWW | |||
| 2 | IL_1NTA_003 | 1NTA | 0.4117 | 0 | Major groove platform; stack outside cWW | A+B | RNA (22-mer) + RNA (18-mer) | C | 15 | U | 16 | U | 17 | C | 18 | * | G | 110 | G | 111 | cWW | ncSH | cWW | ||
| 3 | IL_4IOA_022 | 4IOA | 0.3763 | 0 | Major groove platform; stack outside cWW (H) | X | LSU rRNA | U | 857 | G | 858 | U | 859 | U | 860 | * | A | 944 | G | 945 | cWW | cWW | |||
| 4 | IL_4V9F_061 | 4V9F | 0.2660 | 0 | Major groove platform; stack outside cWW | 0 | LSU rRNA | G | 1744 | G | 1745 | A | 1746 | A | 1747 | * | U | 2034 | C | 2035 | cWW | tSH | cWW | ||
| 5 | IL_4WF9_064 | 4WF9 | 0.2296 | 0 | Major groove platform; stack outside cWW | X | LSU rRNA | G | 1710 | G | 1711 | A | 1712 | A | 1713 | * | U | 2020 | C | 2021 | cWW | tSH | cWW | ||
| 6 | IL_4V9F_008 | 4V9F | 0.2217 | 0 | Major groove platform; stack outside cWW | 0 | LSU rRNA | C | 245 | G | 246 | A | 247 | A | 248 | * | U | 265 | G | 266 | cWW | tSH | cWW | ||
| 7 | IL_4V88_428 | 4V88 | 0.2145 | 0 | Major groove platform; stack outside cWW | A6 | SSU rRNA | C | 962 | A | 963 | U | 964 | U | 965 | * | A | 865 | G | 866 | cWW | cWW | |||
| 8 | IL_4QK8_003 | 4QK8 | 0.0000 | 0 | A | cyclic di-AMP riboswitch | C | 89 | G | 90 | A | 91 | C | 92 | * | G | 39 | G | 40 | cWW | ncSH | tSH | cWW | ||
| 9 | IL_4W90_004 | 4W90 | 0.1673 | 0 | Major groove platform; stack outside cWW | C | cyclic di-AMP riboswitch | C | 96 | G | 97 | U | 98 | C | 99 | * | G | 58 | G | 59 | cWW | ntSH | cWW | ||
| 10 | IL_4QK9_003 | 4QK9 | 0.2067 | 0 | Major groove platform; stack outside cWW | A | cyclic di-AMP riboswitch | C | 93 | G | 94 | U | 95 | C | 96 | * | G | 43 | G | 44 | cWW | ntSH | cWW | ||
| 11 | IL_4WF9_049 | 4WF9 | 0.3080 | 0 | Major groove platform; stack outside cWW | X | LSU rRNA | G | 1347 | U | 1348 | U | 1349 | U | 1350 | * | A | 1647 | C | 1648 | cWW | cWW | |||
| 12 | IL_4Y4O_226 | 4Y4O | 0.3205 | 0 | Major groove platform; stack outside cWW (H) | 2A | LSU rRNA | G | 1310 | G | 1311 | U | 1312 | U | 1313 | * | A | 1603 | C | 1604 | cWW | cSH | cWW | ||
| 13 | IL_5J7L_290 | 5J7L | 0.5846 | 0 | Major groove platform; stack outside cWW | DA | LSU rRNA | G | 1310 | G | 1311 | U | 1312 | U | 1313 | * | A | 1603 | C | 1604 | cWW | cWW | |||
| 14 | IL_4V9F_050 | 4V9F | 0.6187 | 0 | Major groove platform; stack outside cWW | 0 | LSU rRNA | G | 1416 | G | 1417 | U | 1418 | U | 1419 | * | A | 1678 | C | 1679 | cWW | cWW | |||
| 15 | IL_4IOA_048 | 4IOA | 0.6254 | 0 | Major groove platform; stack outside cWW (H) | X | LSU rRNA | G | 1323 | G | 1324 | U | 1325 | U | 1326 | * | A | 1619 | C | 1620 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUU*AC | 4 |
| GGAA*UC | 2 |
| CGUC*GG | 2 |
| CAUC*GG | 1 |
| CUUC*GG | 1 |
| UGUU*AG | 1 |
| CGAA*UG | 1 |
| CAUU*AG | 1 |
| CGAC*GG | 1 |
| GUUU*AC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU* | 7 |
| GA* | 4 |
| AU* | 2 |
| UU* | 2 |
- Annotations
-
- Major groove platform; stack outside cWW (11)
- Major groove platform; stack outside cWW (H) (3)
- (1)
- Basepair signature
- cWW-tSH-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.41 | Max 0.68
Coloring options: