Motif IL_70995.2 Version IL_70995.2 of this group appears in releases 3.12 to 3.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6	1-6	2-3	2-4	2-5	4-5
1	IL_3DIL_004	3DIL	0.4690	Major groove platform; stack outside cWW	A	RNA (174-MER)	C	38	A	39	U	40	C	41	*	G	54	G	55	cWW				cWW
2	IL_1NTA_003	1NTA	0.4117	Major groove platform; stack outside cWW	A+B	RNA (22-mer) + RNA (18-mer)	C	15	U	16	U	17	C	18	*	G	110	G	111	cWW		ncSH		cWW
3	IL_4IOA_022	4IOA	0.3763	Major groove platform; stack outside cWW (H)	X	LSU rRNA	U	857	G	858	U	859	U	860	*	A	944	G	945	cWW				cWW
4	IL_4V9F_061	4V9F	0.2660	Major groove platform; stack outside cWW	0	LSU rRNA	G	1744	G	1745	A	1746	A	1747	*	U	2034	C	2035	cWW			tSH	cWW
5	IL_4WF9_064	4WF9	0.2296	Major groove platform; stack outside cWW	X	LSU rRNA	G	1710	G	1711	A	1712	A	1713	*	U	2020	C	2021	cWW			tSH	cWW
6	IL_4V9F_008	4V9F	0.2217	Major groove platform; stack outside cWW	0	LSU rRNA	C	245	G	246	A	247	A	248	*	U	265	G	266	cWW			tSH	cWW
7	IL_4V88_428	4V88	0.2145	Major groove platform; stack outside cWW	A6	SSU rRNA	C	962	A	963	U	964	U	965	*	A	865	G	866	cWW				cWW
8	IL_4QK8_003	4QK8	0.0000		A	C-di-AMP riboswitch	C	89	G	90	A	91	C	92	*	G	39	G	40	cWW		ncSH	tSH	cWW
9	IL_4W90_004	4W90	0.1673	Major groove platform; stack outside cWW	C	cyclic di-AMP riboswitch	C	96	G	97	U	98	C	99	*	G	58	G	59	cWW			ntSH	cWW
10	IL_4QK9_003	4QK9	0.2067	Major groove platform; stack outside cWW	A	C-di-AMP riboswitch	C	93	G	94	U	95	C	96	*	G	43	G	44	cWW			ntSH	cWW
11	IL_4WF9_049	4WF9	0.3080	Major groove platform; stack outside cWW	X	LSU rRNA	G	1347	U	1348	U	1349	U	1350	*	A	1647	C	1648	cWW				cWW
12	IL_4Y4O_226	4Y4O	0.3205	Major groove platform; stack outside cWW (H)	2A	LSU rRNA	G	1310	G	1311	U	1312	U	1313	*	A	1603	C	1604	cWW	cSH			cWW
13	IL_5J7L_290	5J7L	0.5846	Major groove platform; stack outside cWW	DA	LSU rRNA	G	1310	G	1311	U	1312	U	1313	*	A	1603	C	1604	cWW				cWW
14	IL_4V9F_050	4V9F	0.6187	Major groove platform; stack outside cWW	0	LSU rRNA	G	1416	G	1417	U	1418	U	1419	*	A	1678	C	1679	cWW				cWW
15	IL_4IOA_048	4IOA	0.6254	Major groove platform; stack outside cWW (H)	X	LSU rRNA	G	1323	G	1324	U	1325	U	1326	*	A	1619	C	1620	cWW				cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUU*AC	4
GGAA*UC	2
CGUC*GG	2
CAUC*GG	1
CUUC*GG	1
UGUU*AG	1
CGAA*UG	1
CAUU*AG	1
CGAC*GG	1
GUUU*AC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GU*	7
GA*	4
AU*	2
UU*	2

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove platform; stack outside cWW (11)
Major groove platform; stack outside cWW (H) (3)
(1)
Basepair signature: cWW-tSH-L-cWW
Heat map statistics: Min 0.10 | Avg 0.41 | Max 0.68

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