Motif IL_71960.1 Version IL_71960.1 of this group appears in releases 3.12 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-2 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_098 | 4WF9 | 0.4846 | 0 | Single bulged A | X | LSU rRNA | C | 2628 | A | 2629 | G | 2630 | * | C | 2618 | G | 2619 | cWW | cWW | |
| 2 | IL_4Y1J_002 | 4Y1J | 0.0000 | 6 | A | yybP-ykoY riboswitch | G | 38 | U | 39 | G | 46 | * | C | 59 | C | 60 | cSH | cWW | cWW | |
| 3 | IL_6CB3_004 | 6CB3 | 0.2504 | 6 | Minor groove platform | B | RNA (99-MER) | G | 38 | U | 39 | G | 46 | * | C | 59 | C | 60 | cSH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CG | 1 |
| GUCUAUUCG*CC | 1 |
| GUCAAUUCG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 1 |
| UCUAUUC* | 1 |
| UCAAUUC* | 1 |
- Annotations
-
- Single bulged A (1)
- (1)
- Minor groove platform (1)
- Basepair signature
- cWW-cSH-cWW
- Heat map statistics
- Min 0.25 | Avg 0.29 | Max 0.58
Coloring options: