Motif IL_71960.2 Version IL_71960.2 of this group appears in releases 3.15 to 3.23
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-2 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_098 | 4WF9 | 0.5834 | 0 | Single bulged A | X | LSU rRNA | C | 2628 | A | 2629 | G | 2630 | * | C | 2618 | G | 2619 | cWW | cWW | |
| 2 | IL_6CB3_004 | 6CB3 | 0.0000 | 6 | Minor groove platform | B | RNA (99-MER) | G | 38 | U | 39 | G | 46 | * | C | 59 | C | 60 | cSH | cWW | cWW |
| 3 | IL_4IOA_094 | 4IOA | 0.5692 | 0 | Single bulged A (H) | X | LSU rRNA | C | 2580 | A | 2581 | G | 2582 | * | C | 2570 | G | 2571 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CG | 2 |
| GUCAAUUCG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 2 |
| UCAAUUC* | 1 |
Release history
| Release | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged A (H) (1)
- Single bulged A (1)
- Minor groove platform (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.57 | Avg 0.40 | Max 0.65
Coloring options: