Motif IL_72655.1 Version IL_72655.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NTB_004 | 1NTB | 0.6264 | 2 | A+B | RNA (22-mer) + RNA (18-mer) | C | 18 | U | 19 | * | A | 105 | C | 106 | A | 108 | G | 110 | cWW | cWW | |
| 2 | IL_3J7A_034 | 3J7A | 0.0000 | 5 | A | SSU rRNA | U | 845 | G | 846 | * | C | 827 | A | 828 | A | 834 | G | 835 | cWW | cWW | |
| 3 | IL_5FDU_055 | 5FDU | 0.6929 | 1 | 1A | LSU rRNA | U | 1461 | G | 1462 | * | C | 1629 | A | 1630 | A | 1632 | A | 1633 | cWW | cWW | |
| 4 | IL_5J7L_301 | 5J7L | 0.7859 | 0 | 180 degree turn | DA | LSU rRNA | U | 1481 | G | 1482 | * | C | 1507 | A | 1508 | A | 1509 | G | 1510 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CU*ACCACG | 1 |
| UG*CAGUUAAAG | 1 |
| UG*CACAA | 1 |
| UG*CAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *CCAC | 1 |
| *AGUUAAA | 1 |
| *ACA | 1 |
| *AA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- 180 degree turn (1)
- Basepair signature
- cWW-R-R-cWW
- Heat map statistics
- Min 0.63 | Avg 0.54 | Max 0.79
Coloring options: