Motif IL_73000.4 Version IL_73000.4 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_044 | 2AW7 | 0.4094 | 2 | A | SSU rRNA | G | 933 | A | 935 | * | U | 1380 | C | 1382 | C | 1383 | C | 1384 | cWW | cWW | cSW | ncSH | |
| 2 | IL_4A1B_066 | 4A1B | 0.3607 | 2 | 1 | LSU rRNA | G | 1539 | U | 1541 | * | A | 1527 | A | 1529 | A | 1530 | C | 1531 | cWW | cWW | cSW | ||
| 3 | IL_3IWN_005 | 3IWN | 0.1680 | 0 | Minor groove platform | A | Cyclic di-GMP-I riboswitch | G | 71 | U | 72 | * | A | 51 | A | 52 | A | 53 | C | 54 | cWW | cWW | ncSW | ncSH |
| 4 | IL_3UCZ_004 | 3UCZ | 0.0000 | 0 | R | Cyclic di-GMP-I riboswitch | G | 76 | U | 77 | * | A | 61 | A | 62 | A | 63 | C | 64 | cWW | cWW | ncSW | ncSH | |
| 5 | IL_2AW7_054 | 2AW7 | 0.2638 | 0 | A | SSU rRNA | G | 1142 | G | 1143 | * | C | 1129 | A | 1130 | G | 1131 | C | 1132 | cWW | cWW | ncSW | ||
| 6 | IL_2AW7_013 | 2AW7 | 0.3272 | 0 | A | SSU rRNA | G | 213 | C | 214 | * | G | 203 | G | 204 | A | 205 | C | 206 | cWW | cWW | ncSW | ||
| 7 | IL_2QBG_003 | 2QBG | 0.3740 | 0 | A | 5S rRNA | C | 30 | C | 31 | * | G | 51 | A | 52 | A | 53 | G | 54 | cWW | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GU*AAAC | 2 |
| GCA*UUCCC | 1 |
| GUU*AGAAC | 1 |
| GG*CAGC | 1 |
| GC*GGAC | 1 |
| CC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 3 |
| C*UCC | 1 |
| U*GAA | 1 |
| *AG | 1 |
| *GA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_73000.4 | Only in the parent motif |
|---|---|---|---|
| IL_73000.3 Compare | IL_2AW7_054, IL_2AW7_044, IL_2AW7_013, IL_3IWN_005, IL_4A1B_066, IL_2QBG_003, IL_3UCZ_004 | IL_1FJG_039, IL_2AW7_046 |
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Minor groove platform (1)
- Basepair signature
- cWW-cSW-cSH-cWW
- Heat map statistics
- Min 0.17 | Avg 0.32 | Max 0.51
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