Motif IL_75737.2 Version IL_75737.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9PN5_202 | 9PN5 | 0.3912 | 0 | B5 | SSU rRNA | A | 1234 | C | 1235 | A | 1236 | * | U | 1249 | U | 1250 | U | 1251 | cWW | cWW | ||
| 2 | IL_9H3G_217 | 9H3G | 0.1606 | 0 | h1 | SSU rRNA | A | 1235 | C | 1236 | A | 1237 | * | U | 1250 | U | 1251 | U | 1252 | cWW | cWW | ||
| 3 | IL_8GLP_257 | 8GLP | 0.0000 | 0 | S2 | SSU rRNA | A | 1291 | C | 1292 | A | 1293 | * | U | 1306 | U | 1307 | U | 1308 | cWW | cWW | ||
| 4 | IL_9SUM_199 | 9SUM | 0.1271 | 0 | CA | SSU rRNA | A | 1204 | C | 1205 | A | 1206 | * | U | 1219 | U | 1220 | U | 1221 | cWW | cWW | ||
| 5 | IL_6RTI_005 | 6RTI | 0.3202 | 0 | Isolated non-canonical cWW pair | X | Aptamer A9g, RNA (43-MER) | A | 4 | CFZ | 5 | CFZ | 6 | * | G | 38 | UFT | 39 | UFT | 40 | cWW | cWW | cWW |
| 6 | IL_7TZS_001 | 7TZS | 0.4990 | 1 | Isolated non-canonical cWW pair | X | TPP riboswitch (THI element) | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW |
| 7 | IL_8F4O_005 | 8F4O | 0.5206 | 1 | Isolated non-canonical cWW pair | B | TPP riboswitch (THI element) | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW |
| 8 | IL_7A0S_052 | 7A0S | 0.5614 | 1 | Isolated non-canonical cWW pair | X | LSU rRNA | U | 1447 | A | 1448 | C | 1449 | * | G | 1573 | A | 1574 | G | 1576 | cWW | ncWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACA*UUU | 4 |
| GGU*AUAC | 2 |
| A(CFZ)(CFZ)*G(UFT)(UFT) | 1 |
| UAC*GACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*U | 4 |
| G*UA | 2 |
| (CFZ)*(UFT) | 1 |
| A*AC | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (4)
- (4)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.13 | Avg 0.39 | Max 0.73
Coloring options: