Motif IL_76223.2 Version IL_76223.2 of this group appears in releases 3.80 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-5	2-3	3-4
1	IL_8C3A_115	8C3A	0.2219	Major groove platform	1	LSU rRNA	U	2921	G	2922	G	2923	*	C	2848	G	2849	cWW		cWW
2	IL_4V9F_086	4V9F	0.1982	Major groove platform	0	LSU rRNA	U	2615	G	2616	G	2617	*	C	2542	G	2543	cWW	nchH	cWW
3	IL_7RQB_096	7RQB	0.1860	Major groove platform	1A	LSU rRNA	U	2580	G	2581	G	2582	*	C	2507	G	2508	cWW	chH	cWW
4	IL_4WF9_094	4WF9	0.2092	Major groove platform	X	LSU rRNA	U	2607	G	2608	G	2609	*	C	2534	G	2535	cWW	chH	cWW
5	IL_5TBW_107	5TBW	0.2096	Major groove platform	1	LSU rRNA	U	2949	G	2950	G	2951	*	C	2876	G	2877	cWW		cWW
6	IL_7A0S_088	7A0S	0.1809	Major groove platform	X	LSU rRNA	U	2559	G	2560	G	2561	*	C	2486	G	2487	cWW	chH	cWW
7	IL_8C3A_112	8C3A	0.1837	Major groove platform	1	LSU rRNA	U	2798	U	2799	G	2800	*	U	2834	G	2835	cWW		cWW
8	IL_4V9F_083	4V9F	0.0000	Major groove platform	0	LSU rRNA	U	2492	C	2493	G	2494	*	U	2528	G	2529	cWW	cHH	cWW
9	IL_5TBW_104	5TBW	0.1261	Major groove platform	1	LSU rRNA	U	2826	U	2827	G	2828	*	U	2862	G	2863	cWW		cWW
10	IL_3WBM_004	3WBM	0.7844	Other IL	Y+X	RNA (25-MER)	G	2	U	3	A	4	*	U	23	C	24	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGG*CG	6
UUG*UG	2
UCG*UG	1
GUA*UC	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*	6
U*	3
C*	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove platform (9)
Other IL (1)
Basepair signature: cWW-L-cWW
Heat map statistics: Min 0.06 | Avg 0.26 | Max 0.84

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