Motif IL_76273.1 Version IL_76273.1 of this group appears in releases 3.85 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1MFQ_003 | 1MFQ | 0.3196 | 0 | Isolated non-canonical cWW pair | A | SRP RNA | U | 132 | A | 133 | U | 134 | * | A | 163 | G | 164 | G | 165 | cWW | ncWW | cWW |
| 2 | IL_5UNE_009 | 5UNE | 0.0000 | 0 | Isolated non-canonical cWW contact | B+A | RNA (47-MER) | U | 7 | G | 8 | A | 9 | * | U | 39 | G | 40 | G | 41 | ncWW | cWW | |
| 3 | IL_4V88_395 | 4V88 | 0.1562 | 0 | Isolated non-canonical cWW contact | A6 | SSU rRNA | A | 162 | G | 163 | A | 164 | * | U | 150 | G | 151 | U | 152 | cWW | cWW | |
| 4 | IL_1SI2_002 | 1SI2 | 0.2169 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | * | U | 403 | G | 404 | A | 405 | cWW | cWW | |
| 5 | IL_1SI3_001 | 1SI3 | 0.2016 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 6 | IL_8C3A_101 | 8C3A | 0.2240 | 0 | 1 | LSU rRNA | G | 2481 | U | 2482 | U | 2483 | * | G | 2420 | A | 2421 | C | 2422 | cWW | ncWW | ncWW | |
| 7 | IL_5UNE_001 | 5UNE | 0.1971 | 0 | Isolated non-canonical cWW contact | A+B | RNA (47-MER) | U | 7 | G | 8 | A | 9 | * | U | 39 | G | 40 | G | 41 | cWW | ncwW | cWW |
| 8 | IL_7A0S_062 | 7A0S | 0.8074 | 4 | Intercalated tWH | X | LSU rRNA | A | 1686 | C | 1687 | G | 1691 | * | C | 1973 | U | 1974 | U | 1976 | cWW | cWW | |
| 9 | IL_7RQB_067 | 7RQB | 0.7874 | 4 | Intercalated tWH | 1A | LSU rRNA | A | 1669 | C | 1670 | G | 1674 | * | C | 1990 | U | 1991 | U | 1993 | cWW | cWW | |
| 10 | IL_5J7L_307 | 5J7L | 0.7783 | 4 | Intercalated tWH | DA | LSU rRNA | A | 1669 | C | 1670 | G | 1674 | * | C | 1990 | U | 1991 | U | 1993 | cWW | cWW | |
| 11 | IL_4WF9_065 | 4WF9 | 0.7996 | 4 | Intercalated tWH | X | LSU rRNA | A | 1713 | C | 1714 | G | 1718 | * | C | 2017 | U | 2018 | U | 2020 | cWW | cWW | |
| 12 | IL_4V9F_062 | 4V9F | 0.7951 | 4 | Intercalated tWH | 0 | LSU rRNA | A | 1747 | U | 1748 | G | 1752 | * | C | 2031 | U | 2032 | U | 2034 | cWW | cWW | |
| 13 | IL_5TBW_077 | 5TBW | 0.8325 | 4 | Intercalated tWH | 1 | LSU rRNA | A | 1901 | G | 1902 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW | |
| 14 | IL_8C3A_083 | 8C3A | 0.8250 | 4 | 1 | LSU rRNA | A | 1897 | G | 1898 | G | 1902 | * | C | 2311 | U | 2312 | U | 2314 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGA*UGG | 2 |
| UGA*UGA | 2 |
| AGUCGG*CUGU | 2 |
| UAU*AGG | 1 |
| AGA*UGU | 1 |
| GUU*GAC | 1 |
| ACUUUG*CUGU | 1 |
| ACUCUG*CUGU | 1 |
| ACUAGG*CUGU | 1 |
| ACUCGG*CUGU | 1 |
| AUUCGG*CUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 5 |
| GUCG*UG | 2 |
| A*G | 1 |
| U*A | 1 |
| CUUU*UG | 1 |
| CUCU*UG | 1 |
| CUAG*UG | 1 |
| CUCG*UG | 1 |
| UUCG*UG | 1 |
- Annotations
-
- Intercalated tWH (6)
- Isolated non-canonical cWW contact (5)
- (2)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.07 | Avg 0.48 | Max 0.85
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