RNA 3D Hub //

Motif IL_76273.1 Version IL_76273.1 of this group appears in releases 3.85 to 3.86

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_1MFQ_0031MFQ0.31960Isolated non-canonical cWW pairA SRP RNAU132A133U134*A163G164G165cWWncWWcWW
2 IL_5UNE_0095UNE0.00000Isolated non-canonical cWW contactB+ARNA (47-MER)U7G8A9*U39G40G41ncWWcWW
3 IL_4V88_3954V880.15620Isolated non-canonical cWW contactA6 SSU rRNAA162G163A164*U150G151U152cWWcWW
4 IL_1SI2_0021SI20.21690Isolated non-canonical cWW contactBRNA (9-mer)U403||||4_675G404||||4_675A405||||4_675*U403G404A405cWWcWW
5 IL_1SI3_0011SI30.20160Isolated non-canonical cWW contactBRNA (9-mer)U403G404A405*U403||||4_675G404||||4_675A405||||4_675cWWcWW
6 IL_8C3A_1018C3A0.224001 LSU rRNAG2481U2482U2483*G2420A2421C2422cWWncWWncWW
7 IL_5UNE_0015UNE0.19710Isolated non-canonical cWW contactA+BRNA (47-MER)U7G8A9*U39G40G41cWWncwWcWW
8 IL_7A0S_0627A0S0.80744Intercalated tWHX LSU rRNAA1686C1687G1691*C1973U1974U1976cWWcWW
9 IL_7RQB_0677RQB0.78744Intercalated tWH1A LSU rRNAA1669C1670G1674*C1990U1991U1993cWWcWW
10 IL_5J7L_3075J7L0.77834Intercalated tWHDA LSU rRNAA1669C1670G1674*C1990U1991U1993cWWcWW
11 IL_4WF9_0654WF90.79964Intercalated tWHX LSU rRNAA1713C1714G1718*C2017U2018U2020cWWcWW
12 IL_4V9F_0624V9F0.79514Intercalated tWH0 LSU rRNAA1747U1748G1752*C2031U2032U2034cWWcWW
13 IL_5TBW_0775TBW0.83254Intercalated tWH1 LSU rRNAA1901G1902G1906*C2333U2334U2336cWWcWW
14 IL_8C3A_0838C3A0.825041 LSU rRNAA1897G1898G1902*C2311U2312U2314cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGA*UGG2
UGA*UGA2
AGUCGG*CUGU2
UAU*AGG1
AGA*UGU1
GUU*GAC1
ACUUUG*CUGU1
ACUCUG*CUGU1
ACUAGG*CUGU1
ACUCGG*CUGU1
AUUCGG*CUGU1
Non-Watson-Crick part of the motif
SequenceCounts
G*G5
GUCG*UG2
A*G1
U*A1
CUUU*UG1
CUCU*UG1
CUAG*UG1
CUCG*UG1
UUCG*UG1

Release history

Release3.853.86
Date2024-06-192024-07-17
StatusNew id, 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Intercalated tWH (6)
  • Isolated non-canonical cWW contact (5)
  • (2)
  • Isolated non-canonical cWW pair (1)
    • Basepair signature
    cWW-L-R-cWW
    Heat map statistics
    Min 0.07 | Avg 0.48 | Max 0.85
    Help

    Coloring options:

    IL_1MFQ_003:IL_1MFQ_003 = 0IL_1MFQ_003:IL_5UNE_009 = 0.3196IL_1MFQ_003:IL_4V88_395 = 0.347IL_1MFQ_003:IL_1SI2_002 = 0.3942IL_1MFQ_003:IL_1SI3_001 = 0.4047IL_1MFQ_003:IL_8C3A_101 = 0.3708IL_1MFQ_003:IL_5UNE_001 = 0.3338IL_1MFQ_003:IL_7A0S_062 = 0.7953IL_1MFQ_003:IL_7RQB_067 = 0.7962IL_1MFQ_003:IL_5J7L_307 = 0.7594IL_1MFQ_003:IL_4WF9_065 = 0.7816IL_1MFQ_003:IL_4V9F_062 = 0.7882IL_1MFQ_003:IL_5TBW_077 = 0.813IL_1MFQ_003:IL_8C3A_083 = 0.8193IL_5UNE_009:IL_1MFQ_003 = 0.3196IL_5UNE_009:IL_5UNE_009 = 0IL_5UNE_009:IL_4V88_395 = 0.1562IL_5UNE_009:IL_1SI2_002 = 0.2169IL_5UNE_009:IL_1SI3_001 = 0.2016IL_5UNE_009:IL_8C3A_101 = 0.224IL_5UNE_009:IL_5UNE_001 = 0.1971IL_5UNE_009:IL_7A0S_062 = 0.8074IL_5UNE_009:IL_7RQB_067 = 0.7874IL_5UNE_009:IL_5J7L_307 = 0.7783IL_5UNE_009:IL_4WF9_065 = 0.7996IL_5UNE_009:IL_4V9F_062 = 0.7951IL_5UNE_009:IL_5TBW_077 = 0.8325IL_5UNE_009:IL_8C3A_083 = 0.825IL_4V88_395:IL_1MFQ_003 = 0.347IL_4V88_395:IL_5UNE_009 = 0.1562IL_4V88_395:IL_4V88_395 = 0IL_4V88_395:IL_1SI2_002 = 0.1396IL_4V88_395:IL_1SI3_001 = 0.1528IL_4V88_395:IL_8C3A_101 = 0.2118IL_4V88_395:IL_5UNE_001 = 0.1916IL_4V88_395:IL_7A0S_062 = 0.8131IL_4V88_395:IL_7RQB_067 = 0.8017IL_4V88_395:IL_5J7L_307 = 0.7892IL_4V88_395:IL_4WF9_065 = 0.8122IL_4V88_395:IL_4V9F_062 = 0.7982IL_4V88_395:IL_5TBW_077 = 0.8308IL_4V88_395:IL_8C3A_083 = 0.8302IL_1SI2_002:IL_1MFQ_003 = 0.3942IL_1SI2_002:IL_5UNE_009 = 0.2169IL_1SI2_002:IL_4V88_395 = 0.1396IL_1SI2_002:IL_1SI2_002 = 0IL_1SI2_002:IL_1SI3_001 = 0.0849IL_1SI2_002:IL_8C3A_101 = 0.1904IL_1SI2_002:IL_5UNE_001 = 0.1912IL_1SI2_002:IL_7A0S_062 = 0.8364IL_1SI2_002:IL_7RQB_067 = 0.8359IL_1SI2_002:IL_5J7L_307 = 0.8184IL_1SI2_002:IL_4WF9_065 = 0.8437IL_1SI2_002:IL_4V9F_062 = 0.8268IL_1SI2_002:IL_5TBW_077 = 0.8469IL_1SI2_002:IL_8C3A_083 = 0.8494IL_1SI3_001:IL_1MFQ_003 = 0.4047IL_1SI3_001:IL_5UNE_009 = 0.2016IL_1SI3_001:IL_4V88_395 = 0.1528IL_1SI3_001:IL_1SI2_002 = 0.0849IL_1SI3_001:IL_1SI3_001 = 0IL_1SI3_001:IL_8C3A_101 = 0.1622IL_1SI3_001:IL_5UNE_001 = 0.1761IL_1SI3_001:IL_7A0S_062 = 0.8208IL_1SI3_001:IL_7RQB_067 = 0.8168IL_1SI3_001:IL_5J7L_307 = 0.8027IL_1SI3_001:IL_4WF9_065 = 0.8292IL_1SI3_001:IL_4V9F_062 = 0.8147IL_1SI3_001:IL_5TBW_077 = 0.8329IL_1SI3_001:IL_8C3A_083 = 0.835IL_8C3A_101:IL_1MFQ_003 = 0.3708IL_8C3A_101:IL_5UNE_009 = 0.224IL_8C3A_101:IL_4V88_395 = 0.2118IL_8C3A_101:IL_1SI2_002 = 0.1904IL_8C3A_101:IL_1SI3_001 = 0.1622IL_8C3A_101:IL_8C3A_101 = 0IL_8C3A_101:IL_5UNE_001 = 0.1727IL_8C3A_101:IL_7A0S_062 = 0.8121IL_8C3A_101:IL_7RQB_067 = 0.7985IL_8C3A_101:IL_5J7L_307 = 0.7911IL_8C3A_101:IL_4WF9_065 = 0.8203IL_8C3A_101:IL_4V9F_062 = 0.8096IL_8C3A_101:IL_5TBW_077 = 0.8295IL_8C3A_101:IL_8C3A_083 = 0.8313IL_5UNE_001:IL_1MFQ_003 = 0.3338IL_5UNE_001:IL_5UNE_009 = 0.1971IL_5UNE_001:IL_4V88_395 = 0.1916IL_5UNE_001:IL_1SI2_002 = 0.1912IL_5UNE_001:IL_1SI3_001 = 0.1761IL_5UNE_001:IL_8C3A_101 = 0.1727IL_5UNE_001:IL_5UNE_001 = 0IL_5UNE_001:IL_7A0S_062 = 0.7821IL_5UNE_001:IL_7RQB_067 = 0.7754IL_5UNE_001:IL_5J7L_307 = 0.7547IL_5UNE_001:IL_4WF9_065 = 0.7824IL_5UNE_001:IL_4V9F_062 = 0.7688IL_5UNE_001:IL_5TBW_077 = 0.7895IL_5UNE_001:IL_8C3A_083 = 0.7955IL_7A0S_062:IL_1MFQ_003 = 0.7953IL_7A0S_062:IL_5UNE_009 = 0.8074IL_7A0S_062:IL_4V88_395 = 0.8131IL_7A0S_062:IL_1SI2_002 = 0.8364IL_7A0S_062:IL_1SI3_001 = 0.8208IL_7A0S_062:IL_8C3A_101 = 0.8121IL_7A0S_062:IL_5UNE_001 = 0.7821IL_7A0S_062:IL_7A0S_062 = 0IL_7A0S_062:IL_7RQB_067 = 0.0951IL_7A0S_062:IL_5J7L_307 = 0.1071IL_7A0S_062:IL_4WF9_065 = 0.1148IL_7A0S_062:IL_4V9F_062 = 0.143IL_7A0S_062:IL_5TBW_077 = 0.1669IL_7A0S_062:IL_8C3A_083 = 0.1674IL_7RQB_067:IL_1MFQ_003 = 0.7962IL_7RQB_067:IL_5UNE_009 = 0.7874IL_7RQB_067:IL_4V88_395 = 0.8017IL_7RQB_067:IL_1SI2_002 = 0.8359IL_7RQB_067:IL_1SI3_001 = 0.8168IL_7RQB_067:IL_8C3A_101 = 0.7985IL_7RQB_067:IL_5UNE_001 = 0.7754IL_7RQB_067:IL_7A0S_062 = 0.0951IL_7RQB_067:IL_7RQB_067 = 0IL_7RQB_067:IL_5J7L_307 = 0.0922IL_7RQB_067:IL_4WF9_065 = 0.1198IL_7RQB_067:IL_4V9F_062 = 0.1357IL_7RQB_067:IL_5TBW_077 = 0.1695IL_7RQB_067:IL_8C3A_083 = 0.1743IL_5J7L_307:IL_1MFQ_003 = 0.7594IL_5J7L_307:IL_5UNE_009 = 0.7783IL_5J7L_307:IL_4V88_395 = 0.7892IL_5J7L_307:IL_1SI2_002 = 0.8184IL_5J7L_307:IL_1SI3_001 = 0.8027IL_5J7L_307:IL_8C3A_101 = 0.7911IL_5J7L_307:IL_5UNE_001 = 0.7547IL_5J7L_307:IL_7A0S_062 = 0.1071IL_5J7L_307:IL_7RQB_067 = 0.0922IL_5J7L_307:IL_5J7L_307 = 0IL_5J7L_307:IL_4WF9_065 = 0.073IL_5J7L_307:IL_4V9F_062 = 0.1027IL_5J7L_307:IL_5TBW_077 = 0.1363IL_5J7L_307:IL_8C3A_083 = 0.1482IL_4WF9_065:IL_1MFQ_003 = 0.7816IL_4WF9_065:IL_5UNE_009 = 0.7996IL_4WF9_065:IL_4V88_395 = 0.8122IL_4WF9_065:IL_1SI2_002 = 0.8437IL_4WF9_065:IL_1SI3_001 = 0.8292IL_4WF9_065:IL_8C3A_101 = 0.8203IL_4WF9_065:IL_5UNE_001 = 0.7824IL_4WF9_065:IL_7A0S_062 = 0.1148IL_4WF9_065:IL_7RQB_067 = 0.1198IL_4WF9_065:IL_5J7L_307 = 0.073IL_4WF9_065:IL_4WF9_065 = 0IL_4WF9_065:IL_4V9F_062 = 0.1084IL_4WF9_065:IL_5TBW_077 = 0.1611IL_4WF9_065:IL_8C3A_083 = 0.1508IL_4V9F_062:IL_1MFQ_003 = 0.7882IL_4V9F_062:IL_5UNE_009 = 0.7951IL_4V9F_062:IL_4V88_395 = 0.7982IL_4V9F_062:IL_1SI2_002 = 0.8268IL_4V9F_062:IL_1SI3_001 = 0.8147IL_4V9F_062:IL_8C3A_101 = 0.8096IL_4V9F_062:IL_5UNE_001 = 0.7688IL_4V9F_062:IL_7A0S_062 = 0.143IL_4V9F_062:IL_7RQB_067 = 0.1357IL_4V9F_062:IL_5J7L_307 = 0.1027IL_4V9F_062:IL_4WF9_065 = 0.1084IL_4V9F_062:IL_4V9F_062 = 0IL_4V9F_062:IL_5TBW_077 = 0.0922IL_4V9F_062:IL_8C3A_083 = 0.1063IL_5TBW_077:IL_1MFQ_003 = 0.813IL_5TBW_077:IL_5UNE_009 = 0.8325IL_5TBW_077:IL_4V88_395 = 0.8308IL_5TBW_077:IL_1SI2_002 = 0.8469IL_5TBW_077:IL_1SI3_001 = 0.8329IL_5TBW_077:IL_8C3A_101 = 0.8295IL_5TBW_077:IL_5UNE_001 = 0.7895IL_5TBW_077:IL_7A0S_062 = 0.1669IL_5TBW_077:IL_7RQB_067 = 0.1695IL_5TBW_077:IL_5J7L_307 = 0.1363IL_5TBW_077:IL_4WF9_065 = 0.1611IL_5TBW_077:IL_4V9F_062 = 0.0922IL_5TBW_077:IL_5TBW_077 = 0IL_5TBW_077:IL_8C3A_083 = 0.0927IL_8C3A_083:IL_1MFQ_003 = 0.8193IL_8C3A_083:IL_5UNE_009 = 0.825IL_8C3A_083:IL_4V88_395 = 0.8302IL_8C3A_083:IL_1SI2_002 = 0.8494IL_8C3A_083:IL_1SI3_001 = 0.835IL_8C3A_083:IL_8C3A_101 = 0.8313IL_8C3A_083:IL_5UNE_001 = 0.7955IL_8C3A_083:IL_7A0S_062 = 0.1674IL_8C3A_083:IL_7RQB_067 = 0.1743IL_8C3A_083:IL_5J7L_307 = 0.1482IL_8C3A_083:IL_4WF9_065 = 0.1508IL_8C3A_083:IL_4V9F_062 = 0.1063IL_8C3A_083:IL_5TBW_077 = 0.0927IL_8C3A_083:IL_8C3A_083 = 0IL_1MFQ_003IL_5UNE_009IL_4V88_395IL_1SI2_002IL_1SI3_001IL_8C3A_101IL_5UNE_001IL_7A0S_062IL_7RQB_067IL_5J7L_307IL_4WF9_065IL_4V9F_062IL_5TBW_077IL_8C3A_083Discrepancy0.000.200.400.600.80
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