#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_6JQ5_0046JQ50.27191BHatchet ribozymeU62C64*G31G32cWWcWW
2 IL_4V9F_0214V9F0.25592Multiple bulged bases0 LSU rRNAC699G702*C726G727cWWcWW
3 IL_1NTA_0021NTA0.27805Major groove intercalationA+BRNA (22-mer) + RNA (18-mer)C7G13*C113G114cWWcWW
4 IL_4YAZ_0084YAZ0.31842Multiple bulged basesRCyclic di-GMP-I riboswitchC64C67*G51G52cWWcWW
5 IL_4YAZ_0074YAZ0.30372Multiple bulged basesRCyclic di-GMP-I riboswitchU47G50*C68G69cWWcWW
6 IL_4LFB_0054LFB0.18182Multiple bulged basesA SSU rRNAC63G66*C103G104cWWcWW
7 IL_5J7L_0055J7L0.16872Multiple bulged basesAA SSU rRNAC63A66*U103G104cWWcWW
8 IL_6CZR_1176CZR0.00002Multiple bulged bases1a SSU rRNAC64G67*C97G98cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGUG*CG2
UGC*GG1
CAUG*CG1
CAUUUGG*CG1
CAGC*GG1
UAAG*CG1
CGAA*UG1
Non-Watson-Crick part of the motif
SequenceCounts
GU*2
G*1
AU*1
AUUUG*1
AG*1
AA*1
GA*1

Release history

Release3.803.813.823.833.843.853.863.87
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-14
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Multiple bulged bases (6)
  • Major groove intercalation (1)
  • (1)
  • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.20 | Max 0.63
    Help

    Coloring options:

    IL_6JQ5_004:IL_6JQ5_004 = 0IL_6JQ5_004:IL_4V9F_021 = 0.2459IL_6JQ5_004:IL_1NTA_002 = 0.6348IL_6JQ5_004:IL_4YAZ_008 = 0.3338IL_6JQ5_004:IL_4YAZ_007 = 0.3061IL_6JQ5_004:IL_4LFB_005 = 0.2732IL_6JQ5_004:IL_5J7L_005 = 0.2652IL_6JQ5_004:IL_6CZR_117 = 0.2719IL_4V9F_021:IL_6JQ5_004 = 0.2459IL_4V9F_021:IL_4V9F_021 = 0IL_4V9F_021:IL_1NTA_002 = 0.0904IL_4V9F_021:IL_4YAZ_008 = 0.1204IL_4V9F_021:IL_4YAZ_007 = 0.1851IL_4V9F_021:IL_4LFB_005 = 0.1762IL_4V9F_021:IL_5J7L_005 = 0.1701IL_4V9F_021:IL_6CZR_117 = 0.2559IL_1NTA_002:IL_6JQ5_004 = 0.6348IL_1NTA_002:IL_4V9F_021 = 0.0904IL_1NTA_002:IL_1NTA_002 = 0IL_1NTA_002:IL_4YAZ_008 = 0.1209IL_1NTA_002:IL_4YAZ_007 = 0.2141IL_1NTA_002:IL_4LFB_005 = 0.2139IL_1NTA_002:IL_5J7L_005 = 0.2016IL_1NTA_002:IL_6CZR_117 = 0.278IL_4YAZ_008:IL_6JQ5_004 = 0.3338IL_4YAZ_008:IL_4V9F_021 = 0.1204IL_4YAZ_008:IL_1NTA_002 = 0.1209IL_4YAZ_008:IL_4YAZ_008 = 0IL_4YAZ_008:IL_4YAZ_007 = 0.2012IL_4YAZ_008:IL_4LFB_005 = 0.2449IL_4YAZ_008:IL_5J7L_005 = 0.2341IL_4YAZ_008:IL_6CZR_117 = 0.3184IL_4YAZ_007:IL_6JQ5_004 = 0.3061IL_4YAZ_007:IL_4V9F_021 = 0.1851IL_4YAZ_007:IL_1NTA_002 = 0.2141IL_4YAZ_007:IL_4YAZ_008 = 0.2012IL_4YAZ_007:IL_4YAZ_007 = 0IL_4YAZ_007:IL_4LFB_005 = 0.1848IL_4YAZ_007:IL_5J7L_005 = 0.1729IL_4YAZ_007:IL_6CZR_117 = 0.3037IL_4LFB_005:IL_6JQ5_004 = 0.2732IL_4LFB_005:IL_4V9F_021 = 0.1762IL_4LFB_005:IL_1NTA_002 = 0.2139IL_4LFB_005:IL_4YAZ_008 = 0.2449IL_4LFB_005:IL_4YAZ_007 = 0.1848IL_4LFB_005:IL_4LFB_005 = 0IL_4LFB_005:IL_5J7L_005 = 0.0577IL_4LFB_005:IL_6CZR_117 = 0.1818IL_5J7L_005:IL_6JQ5_004 = 0.2652IL_5J7L_005:IL_4V9F_021 = 0.1701IL_5J7L_005:IL_1NTA_002 = 0.2016IL_5J7L_005:IL_4YAZ_008 = 0.2341IL_5J7L_005:IL_4YAZ_007 = 0.1729IL_5J7L_005:IL_4LFB_005 = 0.0577IL_5J7L_005:IL_5J7L_005 = 0IL_5J7L_005:IL_6CZR_117 = 0.1687IL_6CZR_117:IL_6JQ5_004 = 0.2719IL_6CZR_117:IL_4V9F_021 = 0.2559IL_6CZR_117:IL_1NTA_002 = 0.278IL_6CZR_117:IL_4YAZ_008 = 0.3184IL_6CZR_117:IL_4YAZ_007 = 0.3037IL_6CZR_117:IL_4LFB_005 = 0.1818IL_6CZR_117:IL_5J7L_005 = 0.1687IL_6CZR_117:IL_6CZR_117 = 0IL_6JQ5_004IL_4V9F_021IL_1NTA_002IL_4YAZ_008IL_4YAZ_007IL_4LFB_005IL_5J7L_005IL_6CZR_117Discrepancy0.000.100.200.300.400.500.60
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