Motif IL_76389.1 Version IL_76389.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6JQ5_004 | 6JQ5 | 0.2719 | 1 | B | RNA (82-MER) | U | 62 | C | 64 | * | G | 31 | G | 32 | cWW | cWW | |
| 2 | IL_4V9F_021 | 4V9F | 0.2559 | 2 | Multiple bulged bases | 0 | LSU rRNA | C | 699 | G | 702 | * | C | 726 | G | 727 | cWW | cWW |
| 3 | IL_1NTA_002 | 1NTA | 0.2780 | 5 | Major groove intercalation | A+B | RNA (22-mer) + RNA (18-mer) | C | 7 | G | 13 | * | C | 113 | G | 114 | cWW | cWW |
| 4 | IL_4YAZ_008 | 4YAZ | 0.3184 | 2 | Multiple bulged bases | R | Cyclic di-GMP-I riboswitch | C | 64 | C | 67 | * | G | 51 | G | 52 | cWW | cWW |
| 5 | IL_4YAZ_007 | 4YAZ | 0.3037 | 2 | Multiple bulged bases | R | Cyclic di-GMP-I riboswitch | U | 47 | G | 50 | * | C | 68 | G | 69 | cWW | cWW |
| 6 | IL_4LFB_005 | 4LFB | 0.1818 | 2 | Multiple bulged bases | A | SSU rRNA | C | 63 | G | 66 | * | C | 103 | G | 104 | cWW | cWW |
| 7 | IL_5J7L_005 | 5J7L | 0.1687 | 2 | Multiple bulged bases | AA | SSU rRNA | C | 63 | A | 66 | * | U | 103 | G | 104 | cWW | cWW |
| 8 | IL_6CZR_117 | 6CZR | 0.0000 | 2 | Multiple bulged bases | 1a | SSU rRNA | C | 64 | G | 67 | * | C | 97 | G | 98 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUG*CG | 2 |
| UGC*GG | 1 |
| CAUG*CG | 1 |
| CAUUUGG*CG | 1 |
| CAGC*GG | 1 |
| UAAG*CG | 1 |
| CGAA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU* | 2 |
| G* | 1 |
| AU* | 1 |
| AUUUG* | 1 |
| AG* | 1 |
| AA* | 1 |
| GA* | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (6)
- Major groove intercalation (1)
- (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.20 | Max 0.63
Coloring options: