Motif IL_76776.3 Version IL_76776.3 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 3-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8OI5_018 | 8OI5 | 0.3688 | 0 | Tandem non-canonical cWW pairs (H) | 1 | LSU rRNA | G | 481 | U | 482 | U | 483 | U | 484 | * | A | 445 | U | 446 | U | 447 | U | 448 | cWW | ncwW | ncSW | cWW | |
| 2 | IL_5EW4_001 | 5EW4 | 0.0000 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (22-mer) | C | 8 | C | 9 | C | 10 | G | 11 | * | C | 14 | C | 15 | C | 16 | G | 17 | cWW | cWB | cwW | cWW | |
| 3 | IL_5UNE_005 | 5UNE | 0.3111 | 0 | tSH-tHW | B+A | RNA (47-MER) | G | 21 | C | 22 | A | 23 | C | 24 | * | G | 21 | C | 22 | A | 23 | C | 24 | cWW | ntWH | ncWS | cWW | |
| 4 | IL_7DLZ_006 | 7DLZ | 0.4154 | 1 | Y | RNA (45-MER) | C | 11 | G | 12 | A | 13 | G | 14 | * | C | 33 | C | 34 | C | 36 | G | 37 | ncWW | ncWW | cWW | cWW | ||
| 5 | IL_8P9A_450 | 8P9A | 0.4102 | 0 | Tandem non-canonical cWW pairs | sR | SSU rRNA | C | 1509 | U | 1510 | U | 1511 | G | 1512 | * | C | 1495 | U | 1496 | U | 1497 | G | 1498 | cWW | cWw | cWW | ||
| 6 | IL_9I0V_001 | 9I0V | 0.4556 | 0 | C | A SELEX-derived artificial RNA aptamer | C | 6 | C | 7 | C | 8 | G | 9 | * | C | 24 | U | 25 | A | 26 | G | 27 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUU*AUUU | 1 |
| CCCG*CCCG | 1 |
| GCAC*GCAC | 1 |
| CGAG*CCACG | 1 |
| CUUG*CUUG | 1 |
| CCCG*CUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*UU | 2 |
| CC*CC | 1 |
| CA*CA | 1 |
| GA*CAC | 1 |
| CC*UA | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (2)
- (2)
- tSH-tHW (1)
- Tandem non-canonical cWW pairs (H) (1)
- Basepair signature
- cWW-L-R-cWW-cWW
- Heat map statistics
- Min 0.31 | Avg 0.37 | Max 0.55
Coloring options: