Motif IL_77152.2 Version IL_77152.2 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1Y0Q_002 | 1Y0Q | 0.3549 | 0 | A | Group I catalytic intron | G | 111 | A | 112 | A | 113 | A | 114 | * | U | 92 | A | 93 | A | 94 | G | 95 | C | 96 | cWW | ncWW | ||
| 2 | IL_1U6B_004 | 1U6B | 0.0000 | 0 | B | 197-MER | G | 119 | A | 120 | A | 121 | G | 122 | * | C | 96 | A | 97 | A | 98 | G | 99 | C | 100 | cWW | cWW | cWW | |
| 3 | IL_3CUL_005 | 3CUL | 0.8322 | 1 | D | RNA (92-MER) | C | 122 | A | 123 | G | 124 | G | 125 | * | U | 144 | A | 145 | U | 147 | G | 148 | G | 149 | cWW | cWW | cWW | |
| 4 | IL_3J7A_010 | 3J7A | 0.9207 | 0 | A | SSU rRNA | A | 302 | U | 303 | C | 304 | G | 305 | * | C | 119 | U | 120 | A | 121 | C | 122 | U | 123 | cWW | ntSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAA*UAAGC | 1 |
| GAAG*CAAGC | 1 |
| CAGG*UAUUGG | 1 |
| AUCG*CUACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AAG | 2 |
| AG*AUUG | 1 |
| UC*UAC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-L-R-R-cWW
- Heat map statistics
- Min 0.35 | Avg 0.56 | Max 0.97
Coloring options: