Motif IL_77647.1 Version IL_77647.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-6 | 3-8 | 4-7 | 6-12 | 7-11 | 9-10 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7L0Z_003 | 7L0Z | 0.0673 | 2 | Part of G-quadruplex | G | RNA (69-MER) | A | 45 | G | 46 | U | 47 | G | 49 | A | 50 | G | 51 | G | 53 | U | 54 | G | 55 | * | C | 18 | G | 19 | G | 20 | G | 21 | U | 22 | cWW | cHW | cHW | cHW | cHW | cWW | |
| 2 | IL_4TS2_006 | 4TS2 | 0.0000 | 2 | Part of G-quadruplex | Y+X | Spinach aptamer RNA, bimolecular construct | A | 64 | G | 65 | U | 66 | G | 68 | A | 69 | G | 70 | G | 72 | U | 73 | G | 74 | * | C | 28 | G | 29 | G | 30 | G | 31 | U | 32 | cWW | cHW | ntSW | cHW | cHW | cHW | cWW |
| 3 | IL_4KZD_005 | 4KZD | 0.1204 | 2 | Part of G-quadruplex | R | RNA (84-MER) | A | 53 | G | 54 | U | 55 | G | 57 | A | 58 | G | 59 | G | 61 | U | 62 | G | 63 | * | C | 25 | G | 26 | G | 27 | G | 28 | U | 29 | cWW | cHW | cHW | cHW | cHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUAGAGUGUG*CGGGU | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAGAGUGU*GGG | 3 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Part of G-quadruplex (3)
- Basepair signature
- cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R
- Heat map statistics
- Min 0.07 | Avg 0.07 | Max 0.13
Coloring options: