Motif IL_77808.1 Version IL_77808.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2XXA_011 | 2XXA | 0.3590 | 1 | G | SSRP RNA | A | 19 | G | 20 | C | 21 | * | G | 78 | G | 79 | U | 81 | cWW | cWH | cWW |
| 2 | IL_5A2Q_073 | 5A2Q | 0.0000 | 0 | 2 | SSU rRNA | G | 1406 | U | 1407 | U | 1408 | * | A | 1438 | A | 1439 | C | 1440 | cWW | cWH | cWW |
| 3 | IL_5A2Q_099 | 5A2Q | 0.2256 | 0 | 3 | IRES | G | 146 | U | 147 | C | 148 | * | G | 245 | A | 246 | C | 247 | cWW | cWH | cWW |
| 4 | IL_1X8W_005 | 1X8W | 0.3656 | 5 | A | Tetrahymena ribozyme RNA | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 187 | C | 189 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGC*GGGU | 1 |
| GUU*AAC | 1 |
| GUC*GAC | 1 |
| GUA*UAAUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*A | 2 |
| G*GG | 1 |
| U*AAUAAG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWH-cWW
- Heat map statistics
- Min 0.23 | Avg 0.29 | Max 0.60
Coloring options: