Motif IL_77853.2 Version IL_77853.2 of this group appears in releases 3.15 to 3.19
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2OZB_001 | 2OZB | 0.2755 | 1 | Single bulged A | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | U | 24 | G | 26 | * | C | 47 | G | 48 | cWW | cWW |
| 2 | IL_4Y4O_238 | 4Y4O | 0.0000 | 1 | Single bulged A (H) | 2A | LSU rRNA | U | 1489 | G | 1491 | * | C | 1499 | G | 1500 | cWW | cWW |
| 3 | IL_4WF9_112 | 4WF9 | 0.3345 | 1 | Major groove intercalation | Y | 5S rRNA | U | 63 | G | 65 | * | C | 15 | A | 16 | cWW | cWW |
| 4 | IL_1NTA_002 | 1NTA | 0.2811 | 5 | Major groove intercalation | A+B | RNA (22-mer) + RNA (18-mer) | C | 7 | G | 13 | * | C | 113 | G | 114 | cWW | cWW |
| 5 | IL_5TBW_018 | 5TBW | 0.6236 | 1 | Single bulged A | 1 | LSU rRNA | C | 577 | G | 579 | * | U | 512 | G | 513 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*CG | 2 |
| UAG*CA | 1 |
| CAUUUGG*CG | 1 |
| CAG*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 4 |
| AUUUG* | 1 |
- Annotations
-
- Major groove intercalation (2)
- Single bulged A (2)
- Single bulged A (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.24 | Avg 0.38 | Max 0.84
Coloring options: