Motif IL_78030.1 Version IL_78030.1 of this group appears in releases 3.33 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KR6_002 | 4KR6 | 0.5816 | 8 | D | RNA (39-MER) | U | 8 | U | 16 | G | 18 | * | C | 25 | A | 26 | A | 27 | G | 28 | cWW | ncWW | cWW | |
| 2 | IL_4V84_070 | 4V84 | 0.0000 | 0 | AV | RNA (34-MER) | C | 6194 | G | 6195 | A | 6196 | * | U | 6180 | C | 6181 | A | 6182 | G | 6183 | cWW | ncWW | cWW | |
| 3 | IL_6VMY_001 | 6VMY | 0.7580 | 0 | A | Cobalamin riboswitch | C | 230 | A | 231 | G | 232 | * | U | 219 | C | 220 | C | 221 | G | 222 | cWW | ntHW | cWW | |
| 4 | IL_3PDR_002 | 3PDR | 0.8457 | 1 | X | M-box riboswitch (ykoK leader) | U | 23 | A | 25 | G | 26 | * | U | 159 | C | 160 | U | 161 | A | 162 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGUGUCCUUG*CAAG | 1 |
| CGA*UCAG | 1 |
| CAG*UCCG | 1 |
| UUAG*UCUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUGUCCUU*AA | 1 |
| G*CA | 1 |
| A*CC | 1 |
| UA*CU | 1 |
Release history
| Release | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-R-cWW
- Heat map statistics
- Min 0.58 | Avg 0.59 | Max 0.96
Coloring options: