Motif IL_78536.1 Version IL_78536.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9AXU_104 | 9AXU | 0.6960 | 0 | 2 | LSU rRNA | U | 3000 | C | 3001 | G | 3002 | * | C | 2989 | G | 2990 | ncWW | cWW | |
| 2 | IL_7OAX_001 | 7OAX | 0.3829 | 0 | Stack outside cWW | A | Chili RNA Aptamer | U | 8 | G | 9 | G | 10 | * | C | 44 | G | 45 | cWW | cWW |
| 3 | IL_1NTA_001 | 1NTA | 0.3560 | 0 | Stack outside cWW | A+B | RNA (22-mer) + RNA (18-mer) | C | 5 | G | 6 | C | 7 | * | G | 114 | G | 115 | cWW | cWW |
| 4 | IL_7L0Z_004 | 7L0Z | 0.2764 | 1 | Stack outside cWW | G | RNA (69-MER) | G | 41 | U | 42 | G | 44 | * | C | 23 | C | 24 | cWW | cWW |
| 5 | IL_4KZD_006 | 4KZD | 0.2172 | 1 | Stack outside cWW | R | RNA (84-MER) | G | 49 | U | 50 | G | 52 | * | C | 30 | C | 31 | cWW | cWW |
| 6 | IL_5LYS_006 | 5LYS | 0.1725 | 1 | Stack outside cWW | B | 7SK RNA | G | 70 | C | 71 | G | 73 | * | C | 36 | C | 37 | cWW | cWW |
| 7 | IL_5LYS_007 | 5LYS | 0.0000 | 1 | Major groove intercalation | B | 7SK RNA | A | 39 | U | 40 | G | 42 | * | C | 67 | U | 68 | cWW | cWW |
| 8 | IL_6DLR_004 | 6DLR | 0.1544 | 1 | Multiple bulged bases | A | Guanidine-I riboswitch | G | 36 | G | 37 | C | 39 | * | G | 22 | C | 23 | cWW | cWW |
| 9 | IL_6XH2_001 | 6XH2 | 0.1395 | 2 | Major groove intercalation | D | TRANS-ACTIVATION RESPONSE ELEMENT | A | 22 | U | 23 | G | 26 | * | C | 39 | U | 40 | cWW | cWW |
| 10 | IL_9DFE_072 | 9DFE | 0.2232 | 1 | Stack outside cWW (H) | 1A | LSU rRNA | U | 1898 | G | 1899 | A | 1901 | * | U | 1841 | G | 1842 | cWW | cWW |
| 11 | IL_5WT1_001 | 5WT1 | 0.2719 | 0 | Stack outside cWW | C | tRNA | G | 43 | G | 44 | U | 45 | * | A | 26 | C | 27 | cWW | cWW |
| 12 | IL_4WF9_106 | 4WF9 | 0.3063 | 0 | Major groove intercalation | X | LSU rRNA | U | 2898 | A | 2899 | C | 2900 | * | G | 2858 | G | 2859 | cWW | cWW |
| 13 | IL_9E6Q_101 | 9E6Q | 0.3379 | 0 | 1 | LSU rRNA | U | 3005 | C | 3006 | C | 3007 | * | G | 2957 | G | 2958 | cWW | cWW | |
| 14 | IL_8B0X_168 | 8B0X | 0.3247 | 0 | Major groove intercalation (H) | a | LSU rRNA | U | 2882 | A | 2883 | C | 2884 | * | G | 2842 | G | 2843 | cWW | cWW |
| 15 | IL_4WF9_071 | 4WF9 | 0.4049 | 1 | Major groove intercalation | X | LSU rRNA | U | 1925 | A | 1926 | A | 1928 | * | U | 1868 | G | 1869 | cWW | cWW |
| 16 | IL_7A0S_067 | 7A0S | 0.3942 | 1 | Major groove intercalation | X | LSU rRNA | U | 1881 | G | 1882 | A | 1884 | * | U | 1833 | G | 1834 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUG*CC | 2 |
| UGAA*UG | 2 |
| UAC*GG | 2 |
| UCG*CG | 1 |
| UGG*CG | 1 |
| CGC*GG | 1 |
| GCUG*CC | 1 |
| AUUG*CU | 1 |
| GGAC*GC | 1 |
| AUCUG*CU | 1 |
| GGU*AC | 1 |
| UCC*GG | 1 |
| UAAA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G* | 3 |
| UU* | 3 |
| GA* | 3 |
| C* | 2 |
| A* | 2 |
| CU* | 1 |
| UCU* | 1 |
| AA* | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Stack outside cWW (6)
- Major groove intercalation (5)
- (2)
- Multiple bulged bases (1)
- Major groove intercalation (H) (1)
- Stack outside cWW (H) (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.38 | Max 0.86
Coloring options: