Motif IL_79398.2 Version IL_79398.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4ERD_003 | 4ERD | 0.0000 | 2 | C+D | RNA (22-mer) | G | 146 | G | 147 | A | 148 | * | U | 119 | C | 120 | C | 123 | cWW | ntSs | cWW | |
| 2 | IL_4J39_001 | 4J39 | 0.8893 | 0 | Isolated non-canonical cWW pair | B | RNA (19-mer) | G | 9||||4_555 | C | 10||||4_555 | C | 11||||4_555 | * | G | 9 | C | 10 | C | 11 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGA*UCGAC | 1 |
| GCC*GCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*CGA | 1 |
| C*C | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_79398.2 | Only in the parent motif |
|---|---|---|---|
| IL_79398.1 Compare | IL_4ERD_003, IL_4J39_001 | IL_1VX6_029 |
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.89 | Avg 0.44 | Max 0.89
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