RNA 3D Hub //

Motif IL_80097.1 Version IL_80097.1 of this group appears in releases 3.86 to 3.86

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-21-52-53-4
1 IL_4LFB_0534LFB0.45100Not an internal loopA SSU rRNAG1274A1275G1276*C1259C1260ncWWntHScWW
2 IL_7RQB_0327RQB0.59010Minor groove platform1A LSU rRNAU877A878G879*C898A899cWWcWW
3 IL_8C3A_4228C3A0.64320Minor groove platformCM SSU rRNAA516C517A518*U530U531cWWcWW
4 IL_4V88_4124V880.38360Minor groove platformA6 SSU rRNAA518C519A520*U532U533cWWntHScWW
5 IL_4UYK_0014UYK0.31630Minor groove platformRSRP RNAC122A123C124*G77G78tHScWW
6 IL_4LFB_0544LFB0.27990Minor groove platformA SSU rRNAC1260A1261C1262*G1273G1274ncWWtHScWW
7 IL_6CZR_1166CZR0.00000Minor groove platform1a SSU rRNAC55A56U57*A352G353cWWntHScWW
8 IL_5J7L_0045J7L0.16780Minor groove platformAA SSU rRNAC54A55U56*A356G357cWWtHScWW
9 IL_4LFB_0044LFB0.15240Minor groove platformA SSU rRNAC54A55U56*A356G357cWWtHScWW
10 IL_4V88_3884V880.20090Minor groove platformA6 SSU rRNAC50A51U52*A428G429cWWtHScWW
11 IL_8C3A_3968C3A0.18810Minor groove platformCM SSU rRNAC50A51U52*A426G427cWWtHScWW
12 IL_4V88_4544V880.32340Minor groove platformA6 SSU rRNAC1306U1307G1308*C1317G1318cSHcWWtHScWW
13 IL_8C3A_4608C3A0.31590Minor groove platformCM SSU rRNAC1291U1292G1293*C1302G1303ncSWcWWcWW
14 IL_4LFB_0454LFB0.52572Minor groove platformA SSU rRNAU1199G1202C1203*G1057G1058cWWtHScWW
15 IL_5J7L_0485J7L0.50462Minor groove platformAA SSU rRNAU1199U1202C1203*G1057G1058cWWtHScWW
16 IL_6CZR_1556CZR0.52242Minor groove platform1a SSU rRNAU1181G1184C1185*G1040G1041cWWntHScWW
17 IL_3RW6_0033RW60.54081Minor groove platformHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAU38A40U41*A20G21cWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAU*AG5
ACA*UU2
CAC*GG2
CUG*CG2
UCAGC*GG2
GAG*CC1
UAG*CA1
UCAUC*GG1
UAAU*AG1
Non-Watson-Crick part of the motif
SequenceCounts
A*9
C*2
U*2
CAG*2
CAU*1
AA*1

Release history

Release3.86
Date2024-07-17
StatusNew id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (16)
  • Not an internal loop (1)
    • Basepair signature
    cWW-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.40 | Max 0.91
    Help

    Coloring options:

    IL_4LFB_053:IL_4LFB_053 = 0IL_4LFB_053:IL_7RQB_032 = 0.4546IL_4LFB_053:IL_8C3A_422 = 0.5313IL_4LFB_053:IL_4V88_412 = 0.5328IL_4LFB_053:IL_4UYK_001 = 0.4888IL_4LFB_053:IL_4LFB_054 = 0.5099IL_4LFB_053:IL_6CZR_116 = 0.451IL_4LFB_053:IL_5J7L_004 = 0.5189IL_4LFB_053:IL_4LFB_004 = 0.459IL_4LFB_053:IL_4V88_388 = 0.4993IL_4LFB_053:IL_8C3A_396 = 0.4448IL_4LFB_053:IL_4V88_454 = 0.4689IL_4LFB_053:IL_8C3A_460 = 0.5471IL_4LFB_053:IL_4LFB_045 = 0.8322IL_4LFB_053:IL_5J7L_048 = 0.8241IL_4LFB_053:IL_6CZR_155 = 0.8328IL_4LFB_053:IL_3RW6_003 = 0.9058IL_7RQB_032:IL_4LFB_053 = 0.4546IL_7RQB_032:IL_7RQB_032 = 0IL_7RQB_032:IL_8C3A_422 = 0.3359IL_7RQB_032:IL_4V88_412 = 0.3311IL_7RQB_032:IL_4UYK_001 = 0.3181IL_7RQB_032:IL_4LFB_054 = 0.374IL_7RQB_032:IL_6CZR_116 = 0.5901IL_7RQB_032:IL_5J7L_004 = 0.6072IL_7RQB_032:IL_4LFB_004 = 0.6045IL_7RQB_032:IL_4V88_388 = 0.6084IL_7RQB_032:IL_8C3A_396 = 0.5893IL_7RQB_032:IL_4V88_454 = 0.3084IL_7RQB_032:IL_8C3A_460 = 0.3289IL_7RQB_032:IL_4LFB_045 = 0.7536IL_7RQB_032:IL_5J7L_048 = 0.754IL_7RQB_032:IL_6CZR_155 = 0.7852IL_7RQB_032:IL_3RW6_003 = 0.8212IL_8C3A_422:IL_4LFB_053 = 0.5313IL_8C3A_422:IL_7RQB_032 = 0.3359IL_8C3A_422:IL_8C3A_422 = 0IL_8C3A_422:IL_4V88_412 = 0.2001IL_8C3A_422:IL_4UYK_001 = 0.3068IL_8C3A_422:IL_4LFB_054 = 0.3161IL_8C3A_422:IL_6CZR_116 = 0.6432IL_8C3A_422:IL_5J7L_004 = 0.6424IL_8C3A_422:IL_4LFB_004 = 0.3044IL_8C3A_422:IL_4V88_388 = 0.2776IL_8C3A_422:IL_8C3A_396 = 0.2494IL_8C3A_422:IL_4V88_454 = 0.3196IL_8C3A_422:IL_8C3A_460 = 0.2901IL_8C3A_422:IL_4LFB_045 = 0.8282IL_8C3A_422:IL_5J7L_048 = 0.8245IL_8C3A_422:IL_6CZR_155 = 0.8767IL_8C3A_422:IL_3RW6_003 = 0.8936IL_4V88_412:IL_4LFB_053 = 0.5328IL_4V88_412:IL_7RQB_032 = 0.3311IL_4V88_412:IL_8C3A_422 = 0.2001IL_4V88_412:IL_4V88_412 = 0IL_4V88_412:IL_4UYK_001 = 0.291IL_4V88_412:IL_4LFB_054 = 0.3188IL_4V88_412:IL_6CZR_116 = 0.3836IL_4V88_412:IL_5J7L_004 = 0.3197IL_4V88_412:IL_4LFB_004 = 0.2942IL_4V88_412:IL_4V88_388 = 0.2601IL_4V88_412:IL_8C3A_396 = 0.2451IL_4V88_412:IL_4V88_454 = 0.362IL_4V88_412:IL_8C3A_460 = 0.3379IL_4V88_412:IL_4LFB_045 = 0.619IL_4V88_412:IL_5J7L_048 = 0.601IL_4V88_412:IL_6CZR_155 = 0.6558IL_4V88_412:IL_3RW6_003 = 0.6605IL_4UYK_001:IL_4LFB_053 = 0.4888IL_4UYK_001:IL_7RQB_032 = 0.3181IL_4UYK_001:IL_8C3A_422 = 0.3068IL_4UYK_001:IL_4V88_412 = 0.291IL_4UYK_001:IL_4UYK_001 = 0IL_4UYK_001:IL_4LFB_054 = 0.1569IL_4UYK_001:IL_6CZR_116 = 0.3163IL_4UYK_001:IL_5J7L_004 = 0.2733IL_4UYK_001:IL_4LFB_004 = 0.2427IL_4UYK_001:IL_4V88_388 = 0.245IL_4UYK_001:IL_8C3A_396 = 0.2437IL_4UYK_001:IL_4V88_454 = 0.3141IL_4UYK_001:IL_8C3A_460 = 0.2998IL_4UYK_001:IL_4LFB_045 = 0.52IL_4UYK_001:IL_5J7L_048 = 0.5207IL_4UYK_001:IL_6CZR_155 = 0.5484IL_4UYK_001:IL_3RW6_003 = 0.5956IL_4LFB_054:IL_4LFB_053 = 0.5099IL_4LFB_054:IL_7RQB_032 = 0.374IL_4LFB_054:IL_8C3A_422 = 0.3161IL_4LFB_054:IL_4V88_412 = 0.3188IL_4LFB_054:IL_4UYK_001 = 0.1569IL_4LFB_054:IL_4LFB_054 = 0IL_4LFB_054:IL_6CZR_116 = 0.2799IL_4LFB_054:IL_5J7L_004 = 0.2077IL_4LFB_054:IL_4LFB_004 = 0.19IL_4LFB_054:IL_4V88_388 = 0.1871IL_4LFB_054:IL_8C3A_396 = 0.2074IL_4LFB_054:IL_4V88_454 = 0.2834IL_4LFB_054:IL_8C3A_460 = 0.2774IL_4LFB_054:IL_4LFB_045 = 0.4776IL_4LFB_054:IL_5J7L_048 = 0.4743IL_4LFB_054:IL_6CZR_155 = 0.4978IL_4LFB_054:IL_3RW6_003 = 0.5332IL_6CZR_116:IL_4LFB_053 = 0.451IL_6CZR_116:IL_7RQB_032 = 0.5901IL_6CZR_116:IL_8C3A_422 = 0.6432IL_6CZR_116:IL_4V88_412 = 0.3836IL_6CZR_116:IL_4UYK_001 = 0.3163IL_6CZR_116:IL_4LFB_054 = 0.2799IL_6CZR_116:IL_6CZR_116 = 0IL_6CZR_116:IL_5J7L_004 = 0.1678IL_6CZR_116:IL_4LFB_004 = 0.1524IL_6CZR_116:IL_4V88_388 = 0.2009IL_6CZR_116:IL_8C3A_396 = 0.1881IL_6CZR_116:IL_4V88_454 = 0.3234IL_6CZR_116:IL_8C3A_460 = 0.3159IL_6CZR_116:IL_4LFB_045 = 0.5257IL_6CZR_116:IL_5J7L_048 = 0.5046IL_6CZR_116:IL_6CZR_155 = 0.5224IL_6CZR_116:IL_3RW6_003 = 0.5408IL_5J7L_004:IL_4LFB_053 = 0.5189IL_5J7L_004:IL_7RQB_032 = 0.6072IL_5J7L_004:IL_8C3A_422 = 0.6424IL_5J7L_004:IL_4V88_412 = 0.3197IL_5J7L_004:IL_4UYK_001 = 0.2733IL_5J7L_004:IL_4LFB_054 = 0.2077IL_5J7L_004:IL_6CZR_116 = 0.1678IL_5J7L_004:IL_5J7L_004 = 0IL_5J7L_004:IL_4LFB_004 = 0.0908IL_5J7L_004:IL_4V88_388 = 0.0915IL_5J7L_004:IL_8C3A_396 = 0.1421IL_5J7L_004:IL_4V88_454 = 0.3052IL_5J7L_004:IL_8C3A_460 = 0.2832IL_5J7L_004:IL_4LFB_045 = 0.4726IL_5J7L_004:IL_5J7L_048 = 0.4534IL_5J7L_004:IL_6CZR_155 = 0.4721IL_5J7L_004:IL_3RW6_003 = 0.4628IL_4LFB_004:IL_4LFB_053 = 0.459IL_4LFB_004:IL_7RQB_032 = 0.6045IL_4LFB_004:IL_8C3A_422 = 0.3044IL_4LFB_004:IL_4V88_412 = 0.2942IL_4LFB_004:IL_4UYK_001 = 0.2427IL_4LFB_004:IL_4LFB_054 = 0.19IL_4LFB_004:IL_6CZR_116 = 0.1524IL_4LFB_004:IL_5J7L_004 = 0.0908IL_4LFB_004:IL_4LFB_004 = 0IL_4LFB_004:IL_4V88_388 = 0.0741IL_4LFB_004:IL_8C3A_396 = 0.1108IL_4LFB_004:IL_4V88_454 = 0.2917IL_4LFB_004:IL_8C3A_460 = 0.282IL_4LFB_004:IL_4LFB_045 = 0.5235IL_4LFB_004:IL_5J7L_048 = 0.5051IL_4LFB_004:IL_6CZR_155 = 0.5281IL_4LFB_004:IL_3RW6_003 = 0.5359IL_4V88_388:IL_4LFB_053 = 0.4993IL_4V88_388:IL_7RQB_032 = 0.6084IL_4V88_388:IL_8C3A_422 = 0.2776IL_4V88_388:IL_4V88_412 = 0.2601IL_4V88_388:IL_4UYK_001 = 0.245IL_4V88_388:IL_4LFB_054 = 0.1871IL_4V88_388:IL_6CZR_116 = 0.2009IL_4V88_388:IL_5J7L_004 = 0.0915IL_4V88_388:IL_4LFB_004 = 0.0741IL_4V88_388:IL_4V88_388 = 0IL_4V88_388:IL_8C3A_396 = 0.0974IL_4V88_388:IL_4V88_454 = 0.282IL_4V88_388:IL_8C3A_460 = 0.2599IL_4V88_388:IL_4LFB_045 = 0.5087IL_4V88_388:IL_5J7L_048 = 0.4913IL_4V88_388:IL_6CZR_155 = 0.5242IL_4V88_388:IL_3RW6_003 = 0.5253IL_8C3A_396:IL_4LFB_053 = 0.4448IL_8C3A_396:IL_7RQB_032 = 0.5893IL_8C3A_396:IL_8C3A_422 = 0.2494IL_8C3A_396:IL_4V88_412 = 0.2451IL_8C3A_396:IL_4UYK_001 = 0.2437IL_8C3A_396:IL_4LFB_054 = 0.2074IL_8C3A_396:IL_6CZR_116 = 0.1881IL_8C3A_396:IL_5J7L_004 = 0.1421IL_8C3A_396:IL_4LFB_004 = 0.1108IL_8C3A_396:IL_4V88_388 = 0.0974IL_8C3A_396:IL_8C3A_396 = 0IL_8C3A_396:IL_4V88_454 = 0.2184IL_8C3A_396:IL_8C3A_460 = 0.2154IL_8C3A_396:IL_4LFB_045 = 0.5084IL_8C3A_396:IL_5J7L_048 = 0.4912IL_8C3A_396:IL_6CZR_155 = 0.5256IL_8C3A_396:IL_3RW6_003 = 0.5621IL_4V88_454:IL_4LFB_053 = 0.4689IL_4V88_454:IL_7RQB_032 = 0.3084IL_4V88_454:IL_8C3A_422 = 0.3196IL_4V88_454:IL_4V88_412 = 0.362IL_4V88_454:IL_4UYK_001 = 0.3141IL_4V88_454:IL_4LFB_054 = 0.2834IL_4V88_454:IL_6CZR_116 = 0.3234IL_4V88_454:IL_5J7L_004 = 0.3052IL_4V88_454:IL_4LFB_004 = 0.2917IL_4V88_454:IL_4V88_388 = 0.282IL_4V88_454:IL_8C3A_396 = 0.2184IL_4V88_454:IL_4V88_454 = 0IL_4V88_454:IL_8C3A_460 = 0.1493IL_4V88_454:IL_4LFB_045 = 0.4721IL_4V88_454:IL_5J7L_048 = 0.4756IL_4V88_454:IL_6CZR_155 = 0.5074IL_4V88_454:IL_3RW6_003 = 0.6127IL_8C3A_460:IL_4LFB_053 = 0.5471IL_8C3A_460:IL_7RQB_032 = 0.3289IL_8C3A_460:IL_8C3A_422 = 0.2901IL_8C3A_460:IL_4V88_412 = 0.3379IL_8C3A_460:IL_4UYK_001 = 0.2998IL_8C3A_460:IL_4LFB_054 = 0.2774IL_8C3A_460:IL_6CZR_116 = 0.3159IL_8C3A_460:IL_5J7L_004 = 0.2832IL_8C3A_460:IL_4LFB_004 = 0.282IL_8C3A_460:IL_4V88_388 = 0.2599IL_8C3A_460:IL_8C3A_396 = 0.2154IL_8C3A_460:IL_4V88_454 = 0.1493IL_8C3A_460:IL_8C3A_460 = 0IL_8C3A_460:IL_4LFB_045 = 0.4055IL_8C3A_460:IL_5J7L_048 = 0.4035IL_8C3A_460:IL_6CZR_155 = 0.4627IL_8C3A_460:IL_3RW6_003 = 0.5616IL_4LFB_045:IL_4LFB_053 = 0.8322IL_4LFB_045:IL_7RQB_032 = 0.7536IL_4LFB_045:IL_8C3A_422 = 0.8282IL_4LFB_045:IL_4V88_412 = 0.619IL_4LFB_045:IL_4UYK_001 = 0.52IL_4LFB_045:IL_4LFB_054 = 0.4776IL_4LFB_045:IL_6CZR_116 = 0.5257IL_4LFB_045:IL_5J7L_004 = 0.4726IL_4LFB_045:IL_4LFB_004 = 0.5235IL_4LFB_045:IL_4V88_388 = 0.5087IL_4LFB_045:IL_8C3A_396 = 0.5084IL_4LFB_045:IL_4V88_454 = 0.4721IL_4LFB_045:IL_8C3A_460 = 0.4055IL_4LFB_045:IL_4LFB_045 = 0IL_4LFB_045:IL_5J7L_048 = 0.1035IL_4LFB_045:IL_6CZR_155 = 0.1613IL_4LFB_045:IL_3RW6_003 = 0.3526IL_5J7L_048:IL_4LFB_053 = 0.8241IL_5J7L_048:IL_7RQB_032 = 0.754IL_5J7L_048:IL_8C3A_422 = 0.8245IL_5J7L_048:IL_4V88_412 = 0.601IL_5J7L_048:IL_4UYK_001 = 0.5207IL_5J7L_048:IL_4LFB_054 = 0.4743IL_5J7L_048:IL_6CZR_116 = 0.5046IL_5J7L_048:IL_5J7L_004 = 0.4534IL_5J7L_048:IL_4LFB_004 = 0.5051IL_5J7L_048:IL_4V88_388 = 0.4913IL_5J7L_048:IL_8C3A_396 = 0.4912IL_5J7L_048:IL_4V88_454 = 0.4756IL_5J7L_048:IL_8C3A_460 = 0.4035IL_5J7L_048:IL_4LFB_045 = 0.1035IL_5J7L_048:IL_5J7L_048 = 0IL_5J7L_048:IL_6CZR_155 = 0.1489IL_5J7L_048:IL_3RW6_003 = 0.3202IL_6CZR_155:IL_4LFB_053 = 0.8328IL_6CZR_155:IL_7RQB_032 = 0.7852IL_6CZR_155:IL_8C3A_422 = 0.8767IL_6CZR_155:IL_4V88_412 = 0.6558IL_6CZR_155:IL_4UYK_001 = 0.5484IL_6CZR_155:IL_4LFB_054 = 0.4978IL_6CZR_155:IL_6CZR_116 = 0.5224IL_6CZR_155:IL_5J7L_004 = 0.4721IL_6CZR_155:IL_4LFB_004 = 0.5281IL_6CZR_155:IL_4V88_388 = 0.5242IL_6CZR_155:IL_8C3A_396 = 0.5256IL_6CZR_155:IL_4V88_454 = 0.5074IL_6CZR_155:IL_8C3A_460 = 0.4627IL_6CZR_155:IL_4LFB_045 = 0.1613IL_6CZR_155:IL_5J7L_048 = 0.1489IL_6CZR_155:IL_6CZR_155 = 0IL_6CZR_155:IL_3RW6_003 = 0.3023IL_3RW6_003:IL_4LFB_053 = 0.9058IL_3RW6_003:IL_7RQB_032 = 0.8212IL_3RW6_003:IL_8C3A_422 = 0.8936IL_3RW6_003:IL_4V88_412 = 0.6605IL_3RW6_003:IL_4UYK_001 = 0.5956IL_3RW6_003:IL_4LFB_054 = 0.5332IL_3RW6_003:IL_6CZR_116 = 0.5408IL_3RW6_003:IL_5J7L_004 = 0.4628IL_3RW6_003:IL_4LFB_004 = 0.5359IL_3RW6_003:IL_4V88_388 = 0.5253IL_3RW6_003:IL_8C3A_396 = 0.5621IL_3RW6_003:IL_4V88_454 = 0.6127IL_3RW6_003:IL_8C3A_460 = 0.5616IL_3RW6_003:IL_4LFB_045 = 0.3526IL_3RW6_003:IL_5J7L_048 = 0.3202IL_3RW6_003:IL_6CZR_155 = 0.3023IL_3RW6_003:IL_3RW6_003 = 0IL_4LFB_053IL_7RQB_032IL_8C3A_422IL_4V88_412IL_4UYK_001IL_4LFB_054IL_6CZR_116IL_5J7L_004IL_4LFB_004IL_4V88_388IL_8C3A_396IL_4V88_454IL_8C3A_460IL_4LFB_045IL_5J7L_048IL_6CZR_155IL_3RW6_003Discrepancy0.000.200.400.600.80
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