Motif IL_80097.2 Version IL_80097.2 of this group appears in releases 3.87 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-2	1-5	2-5	3-4
1	IL_3RW6_003	3RW6	0.5408	1	Minor groove platform	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	U	38	A	40	U	41	*	A	20	G	21		cWW	tHS	cWW
2	IL_6CZR_155	6CZR	0.5224	2	Minor groove platform	1a	SSU rRNA	U	1181	G	1184	C	1185	*	G	1040	G	1041		cWW	ntHS	cWW
3	IL_5J7L_048	5J7L	0.5046	2	Minor groove platform	AA	SSU rRNA	U	1199	U	1202	C	1203	*	G	1057	G	1058		cWW	tHS	cWW
4	IL_4LFB_045	4LFB	0.5257	2	Minor groove platform	A	SSU rRNA	U	1199	G	1202	C	1203	*	G	1057	G	1058		cWW	tHS	cWW
5	IL_8C3A_460	8C3A	0.3159	0	Minor groove platform	CM	SSU rRNA	C	1291	U	1292	G	1293	*	C	1302	G	1303	ncSW	cWW		cWW
6	IL_4V88_454	4V88	0.3234	0	Minor groove platform	A6	SSU rRNA	C	1306	U	1307	G	1308	*	C	1317	G	1318	cSH	cWW	tHS	cWW
7	IL_8C3A_396	8C3A	0.1881	0	Minor groove platform	CM	SSU rRNA	C	50	A	51	U	52	*	A	426	G	427		cWW	tHS	cWW
8	IL_4V88_388	4V88	0.2009	0	Minor groove platform	A6	SSU rRNA	C	50	A	51	U	52	*	A	428	G	429		cWW	tHS	cWW
9	IL_4LFB_004	4LFB	0.1524	0	Minor groove platform	A	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
10	IL_5J7L_004	5J7L	0.1678	0	Minor groove platform	AA	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
11	IL_6CZR_116	6CZR	0.0000	0	Minor groove platform	1a	SSU rRNA	C	55	A	56	U	57	*	A	352	G	353		cWW	ntHS	cWW
12	IL_4LFB_054	4LFB	0.2799	0	Minor groove platform	A	SSU rRNA	C	1260	A	1261	C	1262	*	G	1273	G	1274		ncWW	tHS	cWW
13	IL_4UYK_001	4UYK	0.3163	0	Minor groove platform	R	SRP RNA	C	122	A	123	C	124	*	G	77	G	78			tHS	cWW
14	IL_4V88_412	4V88	0.3836	0	Minor groove platform	A6	SSU rRNA	A	518	C	519	A	520	*	U	532	U	533		cWW	ntHS	cWW
15	IL_8C3A_422	8C3A	0.6432	0	Minor groove platform	CM	SSU rRNA	A	516	C	517	A	518	*	U	530	U	531		cWW		cWW
16	IL_8VTW_031	8VTW	0.5986	0	Minor groove platform (H)	1A	LSU rRNA	U	877	A	878	G	879	*	C	898	A	899		cWW		cWW
17	IL_4LFB_053	4LFB	0.4510	0	Not an internal loop	A	SSU rRNA	G	1274	A	1275	G	1276	*	C	1259	C	1260		ncWW	ntHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAU*AG	5
UCAGC*GG	2
CUG*CG	2
CAC*GG	2
ACA*UU	2
UAAU*AG	1
UCAUC*GG	1
UAG*CA	1
GAG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	9
CAG*	2
U*	2
C*	2
AA*	1
CAU*	1

Release history

Release	3.87
Date	2024-08-14
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Minor groove platform (15)
Not an internal loop (1)
Minor groove platform (H) (1)
Basepair signature: cWW-tHS-cWW
Heat map statistics: Min 0.07 | Avg 0.40 | Max 0.91

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Coloring options: Nucleotide numbers

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