Motif IL_81168.1 Version IL_81168.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-6 | 1-8 | 2-5 | 2-7 | 3-4 | 6-7 | 6-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_021 | 5J7L | 0.2408 | 1 | AA | SSU rRNA | C | 440 | A | 441 | G | 442 | * | C | 492 | A | 493 | G | 494 | A | 496 | G | 497 | cWW | ncWw | cWW | ncSH | ||||
| 2 | IL_4PDB_001 | 4PDB | 0.0000 | 0 | Other IL | I | SELEX RNA aptamer | C | 28 | A | 29 | G | 30 | * | C | 9 | A | 10 | G | 11 | U | 12 | G | 13 | cWW | cWw | cWW | cSH | |||
| 3 | IL_4V8P_247 | 4V8P | 0.2784 | 0 | Major groove platform with extra pair (H) | D1 | LSU rRNA | C | 2230 | G | 2231 | C | 2232 | * | G | 2201 | A | 2202 | A | 2203 | U | 2204 | G | 2205 | cWW | ncWW | cWW | ncSH | |||
| 4 | IL_4WF9_114 | 4WF9 | 0.6719 | 0 | Y | 5S rRNA | C | 28 | C | 29 | U | 30 | * | A | 48 | G | 49 | A | 50 | A | 51 | G | 52 | ncBW | cWW | ncWW | ncSW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CAGAAG | 1 |
| CAG*CAGUG | 1 |
| CGC*GAAUG | 1 |
| CCU*AGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*AGAA | 1 |
| A*AGU | 1 |
| G*AAU | 1 |
| C*GAA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Other IL (1)
- Major groove platform with extra pair (H) (1)
- Basepair signature
- cWW-cSH-R-cWW-cWW
- Heat map statistics
- Min 0.24 | Avg 0.39 | Max 0.78
Coloring options: